BAC Information

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BAC

Clone NameMSMg01-497C17
Chromosome10 (Build37)
Map Location 92,018,630 - 92,019,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203, LOC216229
Downstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497C17.T7 (MSMg01no497_c17.b1)MSMg01-497C17.TJ (MSMg01no497_c17.g1)
ACCAG573802AG573803
length753754
length of high quality
(start - end)
696 (50 - 745)591 (78 - 668)
definitionCHROMAT_FILE: MSMg01no497_c17.b1 PHD_FILE: MSMg01no497_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:45 2005CHROMAT_FILE: MSMg01no497_c17.g1 PHD_FILE: MSMg01no497_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCC
GTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTC
AGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGT
CTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGA
AATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTGGTGTTAGGAG
CCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAA
ATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAG
AGTAGGAGCGAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTT
CCACGGGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGG
GGAGAGATTAGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATT
AGCGGAGGTCTCTAGGAGAAGGAGCCTATACTCATCACTAGGTGAGCTCA
AGGAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAAAGGCTATTAGGGCC
TGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGGACAACTAACAAAGAT
CGTCCAGGGACCTCAGGAGTCCTTCTCAGATTTTGTGGCCAGAATGACAG
AGG
NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCACCGCTTGCAAAGCAGGAGA
GAGTGAAAGTGGAAAACTGATTAAAAGAAGTCACAGCGACGTTGTCCACC
CTTATATTGAGACGTAAATAACAGCAGCAAATCCCATCGCTTAGGAAAGT
CTGCGAGGGGCTTTTCCTTTGGAAACACGTTTTACCACCAACTTTGTTCT
CTTGAGACATCCTCCATTTAAAAGCATATTGGATATTGGAGATATCCTCC
ATTTAAAAGCATATTGGAACTAACCCAGCATTGCTTTTAATTAGCACAGA
AATGCTAATTAGATTTTTTTCTGTGTGATGCTCAATGCTGGCTGTCAGAG
TCCTGCATTTTTCATTCCAGTTGCAATGAAGGTACCGAGGGGGTCACCAG
ACCCACTTGCAAATTGATGAAGGCCAGTACATCCAGGCTGATTGTTATTT
TAAAACTGTAGAGATCTGTTAGAAGACACATGAGTCTAATGGCGCTCGAA
AAGAAAAAATAAATAAATAAATAAAAAGAGCGGGCTTTTTCTTTGCTCTA
GACAGGAGCATAATTTCACAAATTATTCAGTATGTGTGGCCCATGCAAAT
CAGGCTTCTTAGTGCAGAGTCAATGCAAACACACCCAAAGCTCAATTTGG
GAAGGAATCTGTTTTCATGCAACAGTCCCTTGTGAAAACAAATAGCTGCC
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_c17.g1 MSMg01no497_c17.g1 CHROMAT_FILE:
MSMg01no497_c17.g1 PHD_FILE: MSMg01no497_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:45 2005
         (591 letters)



>mm_chr10_92018545_92019535
          Length = 991

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaccgcttgcaaagcaggagagagtgaaagtggaaaactgattaaaagaagtcacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cccaccgcttgcaaagcaggagagagtgaaagtggaaaactgattaaaagaagtcacagc 617

                                                                       
Query: 61  gacgttgtccacccttatattgagacgtaaataacagcagcaaatcccatcgcttaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gacgttgtccacccttatattgagacgtaaataacagcagcaaatcccatcgcttaggaa 557

                                                                       
Query: 121 agtctgcgaggggcttttcctttggaaacacgttttaccaccaactttgttctcttgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agtctgcgaggggcttttcctttggaaacacgttttaccaccaactttgttctcttgaga 497

                                                                       
Query: 181 catcctccatttaaaagcatattggatattggagatatcctccatttaaaagcatattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catcctccatttaaaagcatattggatattggagatatcctccatttaaaagcatattgg 437

                                                                       
Query: 241 aactaacccagcattgcttttaattagcacagaaatgctaattagatttttttctgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aactaacccagcattgcttttaattagcacagaaatgctaattagatttttttctgtgtg 377

                                                                       
Query: 301 atgctcaatgctggctgtcagagtcctgcatttttcattccagttgcaatgaaggtaccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgctcaatgctggctgtcagagtcctgcatttttcattccagttgcaatgaaggtaccg 317

                                                                       
Query: 361 agggggtcaccagacccacttgcaaattgatgaaggccagtacatccaggctgattgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agggggtcaccagacccacttgcaaattgatgaaggccagtacatccaggctgattgtta 257

                                                                       
Query: 421 ttttaaaactgtagagatctgttagaagacacatgagtctaatggcgctcgaaaagaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttttaaaactgtagagatctgttagaagacacatgagtctaatggcgctcgaaaagaaaa 197

                                                                       
Query: 481 aataaataaataaataaaaagagcgggctttttctttgctctagacaggagcataatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aataaataaataaataaaaagagcgggctttttctttgctctagacaggagcataatttc 137

                                                              
Query: 541 acaaattattcagtatgtgtggcccatgcaaatcaggcttcttagtgcaga 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 acaaattattcagtatgtgtggcccatgcaaatcaggcttcttagtgcaga 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)