BAC Information

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BAC

Clone NameMSMg01-497K12
Chromosome10 (Build37)
Map Location 100,243,962 - 100,384,099
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497K12.T7 (MSMg01no497_k12.b1)MSMg01-497K12.TJ (MSMg01no497_k12.g1)
ACCAG574170AG574171
length753757
length of high quality
(start - end)		688 (49 - 736)635 (78 - 712)
definitionCHROMAT_FILE: MSMg01no497_k12.b1 PHD_FILE: MSMg01no497_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:25 2005CHROMAT_FILE: MSMg01no497_k12.g1 PHD_FILE: MSMg01no497_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,383,549 - 100,384,099)(100,243,962 - 100,244,596)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTCCCTTTACGTAAAAAGAAAAACCTGCCAACACAATTCTC
TATCGATAAGTGTGTTAAAAAAGTACACTGCAGCATTTCATACCACGCAC
TGCCATTCTATTCCAAGCTGTCCATAATAGCATCTGGATCCCAGTCATCA
GCAGACTATCCAGATTACAAATCTTATCGGAATAGACTCTTTCTCAGGTT
GTTTCTACAAGTTGAGTGCACTAGAGAGCAGTTCTGAGATAAAGATCATG
ATACAGGATATTATTGGCAATGGTCTTAGGATTATCTTCTGTGAGGGGAA
AGGAAAGGATGCAAAATTAGATGGGGGAGAAGCTGCACATCTGTACAGTT
TCATTTCGGTTCCATAACCTTCAGAGATCTCTGACGCCGCAATGGTCCAC
TGGAAGAGACTGTCAAAATGATTTGAACTTTGAATAAAATCCTGCTTAGT
GGCATCATGTTGATCAGTGTTCTCTGGCCTAATTATTTTACCAACAATGG
TGTTTTCTGTTCCTACACACACACAAAAAGATGTCCACAATTAATATTGT
ATTTCTACCTCATAGGAACCAACATAAAACATACCCCTCACTGAGAAACT
CTGTTTTGGCTTACTTGATATGCCTAGCATTTGCATCCACATTTTTCTTC
ATGCAATTCATTGTTTTCTGTCTACGTATCACGAATTTTTTTCCAGTGGA
TAA

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATGCCAATCCTTTGGAATGT
ATGCTGTGGGGATTTGGGGATACTTGCAAAATAAAATGCACAATGTGAAT
ATAATAGTGGAATCGGATTTAACTGATGGAGAAGGAGAACAAGGTCTAAC
AGAAATGAGATTAGTGCCTGGGGCATAAAGGAAAGCATCGCTGGAAAAGT
CCCTCCACAGAATGAAGAGATAATGAAATTAGGAAGACACTTTTTAAGAC
CCTGGAGAGGACTCATGACTGCTTTAAATTTGTGAATATGCATCAAAGTA
GAACTCAGTTGAAATTTCCCATAAACAAGAGATTGCTGGGTGTGGTTGGA
TCAGGAGAGGGTCCCTCTCTCAAATCTCTCTCACAGTCCCTACTTACTCT
CAAGTTGACAGATTATTTTTCCTTGATTATTACTGTTATATACACATATT
CATATTTTTATGTGCATATACATACATAGCATACTGAGTTCATTTTTGCC
GGTGATGTATAGACAATTAAAAATCTGACCATTCAGCATTGCATCACCAA
GGGTAATCTCACATTTCACATCATTTGGTGAGGTGAGTTTTCTTCCTCTC
AGCAGCCATTTAGTTGCCTTTAGTTCTTTACTATAAGTGAGACCTTATGA
AGATTTTTTCCAGGTTAATATATCCATTTGTATTGCTATTTCCAGCCTAG
TTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_k12.b1 MSMg01no497_k12.b1 CHROMAT_FILE:
MSMg01no497_k12.b1 PHD_FILE: MSMg01no497_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:25 2005
         (688 letters)



>mm_chr10_100383012_100384099
          Length = 1088

 Score = 1065 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Minus

                                                                        
Query: 138  ggatcccagtcatcagcagactatccagattacaaatcttatcggaatagactctttctc 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ggatcccagtcatcagcagactatccagattacaaatcttatcggaatagactctttctc 1029

                                                                        
Query: 198  aggttgtttctacaagttgagtgcactagagagcagttctgagataaagatcatgataca 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 aggttgtttctacaagttgagtgcactagagagcagttctgagataaagatcatgataca 969

                                                                        
Query: 258  ggatattattggcaatggtcttaggattatcttctgtgaggggaaaggaaaggatgcaaa 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  ggatattattggcaatggtcttaggattatcttctgtgaggggaaaggaaaggatgcaaa 909

                                                                        
Query: 318  attagatgggggagaagctgcacatctgtacagtttcatttcggttccataaccttcaga 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  attagatgggggagaagctgcacatctgtacagtttcatttcggttccataaccttcaga 849

                                                                        
Query: 378  gatctctgacgccgcaatggtccactggaagagactgtcaaaatgatttgaactttgaat 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  gatctctgacgccgcaatggtccactggaagagactgtcaaaatgatttgaactttgaat 789

                                                                        
Query: 438  aaaatcctgcttagtggcatcatgttgatcagtgttctctggcctaattattttaccaac 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  aaaatcctgcttagtggcatcatgttgatcagtgttctctggcctaattattttaccaac 729

                                                                        
Query: 498  aatggtgttttctgttcctacacacacacaaaaagatgtccacaattaatattgtatttc 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  aatggtgttttctgttcctacacacacacaaaaagatgtccacaattaatattgtatttc 669

                                                                        
Query: 558  tacctcataggaaccaacataaaacatacccctcactgagaaactctgttttggcttact 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668  tacctcataggaaccaacataaaacatacccctcactgagaaactctgttttggcttact 609

                                                                        
Query: 618  tgatatgcctagcatttgcatccacatttttcttcatgcaattcattgttttctgtctac 677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  tgatatgcctagcatttgcatccacatttttcttcatgcaattcattgttttctgtctac 549

                       
Query: 678  gtatcacgaat 688
            |||||||||||
Sbjct: 548  gtatcacgaat 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_k12.g1 MSMg01no497_k12.g1 CHROMAT_FILE:
MSMg01no497_k12.g1 PHD_FILE: MSMg01no497_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:25 2005
         (635 letters)



>mm_chr10_100243762_100244796
          Length = 1035

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatgccaatcctttggaatgtatgctgtggggatttggggatacttgcaaaataaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatgccaatcctttggaatgtatgctgtggggatttggggatacttgcaaaataaaat 260

                                                                       
Query: 61  gcacaatgtgaatataatagtggaatcggatttaactgatggagaaggagaacaaggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacaatgtgaatataatagtggaatcggatttaactgatggagaaggagaacaaggtct 320

                                                                       
Query: 121 aacagaaatgagattagtgcctggggcataaaggaaagcatcgctggaaaagtccctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagaaatgagattagtgcctggggcataaaggaaagcatcgctggaaaagtccctcca 380

                                                                       
Query: 181 cagaatgaagagataatgaaattaggaagacactttttaagaccctggagaggactcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaatgaagagataatgaaattaggaagacactttttaagaccctggagaggactcatg 440

                                                                       
Query: 241 actgctttaaatttgtgaatatgcatcaaagtagaactcagttgaaatttcccataaaca 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgctagaaatttgtgaatatgcatcaaagtagaactcagttgaaatttcccataaaca 500

                                                                       
Query: 301 agagattgctgggtgtggttggatcaggagagggtccctctctcaaatctctctcacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagattgctgggtgtggttggatcaggagagggtccctctctcaaatctctctcacagt 560

                                                                       
Query: 361 ccctacttactctcaagttgacagattatttttccttgattattactgttatatacacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctacttactctcaagttgacagattatttttccttgattattactgttatatacacat 620

                                                                       
Query: 421 attcatatttttatgtgcatatacatacatagcatactgagttcatttttgccggtgatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcatatttttatgtgcatatacatacatagcatactgagttcatttttgccggtgatg 680

                                                                       
Query: 481 tatagacaattaaaaatctgaccattcagcattgcatcaccaagggtaatctcacatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatagacaattaaaaatctgaccattcagcattgcatcaccaagggtaatctcacatttc 740

                                                                       
Query: 541 acatcatttggtgaggtgagttttcttcctctcagcagccatttagttgcctttagttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acatcatttggtgaggtgagttttcttcctctcagcagccatttagttgcctttagttct 800

                                              
Query: 601 ttactataagtgagaccttatgaagattttttcca 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 ttactataagtgagaccttatgaagattttttcca 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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