Query= MSMg01no497_l07.b1 MSMg01no497_l07.b1 CHROMAT_FILE:
MSMg01no497_l07.b1 PHD_FILE: MSMg01no497_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:29 2005
(664 letters)
>mm_chr10_20458282_20459345
Length = 1064
Score = 1160 bits (600), Expect = 0.0
Identities = 646/666 (96%), Gaps = 11/666 (1%)
Strand = Plus / Minus
Query: 1 acacagggnaactcttgttgtatatacagagctaaagaagacagccataatcaacagcct 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 acacaggg-aactcttgttgtatatacagagctaaagaagacagccataatcaacagcct 910
Query: 61 tt---aaaaaaaaaaaggcagatttaaatctctattaagctaccttgggtcagaagcata 117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ttaaaaaaaaaaaaaaggcagatttaaatctctattaagctaccttgggtcagaagcata 850
Query: 118 acagagctgacctacttctctttctctgaaagatgaagcaggatgcatgctagtttatca 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 849 acagagctgacctacttctctttctctgaaagatcaagcaggatgcatgctagtttatca 790
Query: 178 gggaagtagcctaagattagccattctcgttatgatgtaagacttagagatgattataaa 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 789 gggaagtagcctaagattagccattcacgttatgatgtaagacttagagatgattataaa 730
Query: 238 gattgtggattgtgtttcagtagactgaaacaatcagatgcaggaaagagcacactctgc 297
||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gattgtgga----g---cagtagactgaaacaatcagatgcaggaaagagcacactctgc 677
Query: 298 aaccttctcggttgggtctatttagatgtggcctgggtgaaactttgaagtacaaggaaa 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 676 aaccttctcggttgggtctatttagatgttgcctgggtgaaactttgaagtacaaggaaa 617
Query: 358 agcaggaaggatttcagcacccaggttacatgagaataggttacagcagatctacaaagt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 616 agcaggaaggatttcagcacccaggttacatgagaataggttacagcagatctacaatgt 557
Query: 418 tccagcgggactgggccagagcgctctggtgaccaagcacggcatttagcttagtcctct 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 556 tccagcgggactgggccagagcgctctggtgaccaagcacagcatttagcttagtcctct 497
Query: 478 cagaggggaacttctgtagcaaatgcatacagaatggctatgttagttagggttttactg 537
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagaggggaccttctgtagcaaatgcatacagaatggctatgttagttagggttttactg 437
Query: 538 ctgtgaacagacaccttgaccaaggcaagtcttataaaagacagcatttaattggggctg 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgtgaacagacaccttgaccaaggcaagtcttataaaagacagcatttaattggggctg 377
Query: 598 gcttacaggttcagaagttcagtccagtatcatcaaggcaggaacatggcagcatccagg 657
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 376 gcttacaggttcagaggttcagtccagtatcatcaaggcaggaacatggaagcatccagg 317
Query: 658 caggca 663
||||||
Sbjct: 316 caggca 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_l07.g1 MSMg01no497_l07.g1 CHROMAT_FILE:
MSMg01no497_l07.g1 PHD_FILE: MSMg01no497_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:29 2005
(609 letters)
>mm_chr10_20298899_20299907
Length = 1009
Score = 1108 bits (573), Expect = 0.0
Identities = 600/613 (97%), Gaps = 8/613 (1%)
Strand = Plus / Plus
Query: 1 catcctcttttccacttgagaaatatgacttggatgcgtgtgtgctctcgtttttatata 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 catcctcttttccacttgagaaatatgacttggatgcgtgcgtgctctcgtttttatata 260
Query: 61 agtttcagtaacccacacactttaatggagtcgttgaggattaagcgtttcctcagcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttcagtaacccacacactttaatggagtcgttgaggattaagcgtttcctcagcagg 320
Query: 121 tctaacaggacaggatctgagtggtattgcactaaatgttctctttgtccacagtcccct 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaacaggacaggatctgagtggcattgcactaaatgttctctttgtccacagtcccct 380
Query: 181 ccaaagggccaatacaaggagaggcaactttagatgttgacggactttcaagggtatcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaagggccaatacaaggagaggcaactttagatgttgacggactttcaagggtatcct 440
Query: 241 gtgttttt----gattattcaggagcggggtagtttaaggacagaacctggccctcctta 296
||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gtg----taggggattattcaggagcagggtagtttaaggacagaacctggccctcctta 496
Query: 297 gatttctagaatctgttttccagcctggtgtttatgcttttgcttaccccacataattat 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 497 gatttctagaatctgttttccagcctggtgtttatgcttttgcttaccccagataattat 556
Query: 357 acctctcctacattgctctggacagatctaagttttgacaggggccagtccattcactcc 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acctctcctacatcgctctggacagatctaagttttgacaggggccagtccattcactcc 616
Query: 417 taaccagtaaaggaagaaagtgtctcctttatttccacgagtccttgtcttctgagagat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taaccagtaaaggaagaaagtgtctcctttatttccacgagtccttgtcttctgagagat 676
Query: 477 aggaaacttgaagtgaactcgaggtttgtacccccacattggtcactttgttaatgtgcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aggaaacttgaagtgaactcgaggtttgtacccccacattggtcactttgttaatgtgcc 736
Query: 537 cagcttctgaggtcaagtctgccttaatatccactattaattcagcccatcagttaaccg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cagcttctgaggtcaagtctgccttaatatccactattaattcagcccatcagttaaccg 796
Query: 597 aaaccccctttaa 609
|||||||||||||
Sbjct: 797 aaaccccctttaa 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
