BAC Information

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BAC

Clone NameMSMg01-498B20
Chromosome10 (Build37)
Map Location 72,025,984 - 72,026,518
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705, LOC100039981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498B20.T7 (MSMg01no498_b20.b1)MSMg01-498B20.TJ (MSMg01no498_b20.g1)
ACCAG574518AG574519
length786783
length of high quality
(start - end)
579 (50 - 628)535 (79 - 613)
definitionCHROMAT_FILE: MSMg01no498_b20.b1 PHD_FILE: MSMg01no498_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:01 2005CHROMAT_FILE: MSMg01no498_b20.g1 PHD_FILE: MSMg01no498_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATAGCAGGCTTGTACAACTACTCTGGAAATCAGTCTGGCGGTCCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAAGGCTTCATCCTGAGTGAGGTAACACATTCAC
AAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAA
ACCTAGTATACCCAAGATATAAGATACAATTTCCTAAACACATGTAACTC
TAGAAAAATGAAGACTGTAGTGTGGACACTATGCCCCTCCTTAGAAGTGG
GGACAAAACACCCTTGGGAAGAGTTACAGAGACAAA
NCCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAATTACAGTTAGGCTGT
AAGAACAAAGACTGAATAAATTATTGATTACGGTAGTAAGGAGACTAACT
GCAGATGGGAAGAACTGACTGAAAATTCAATTACTAGAGTCAGTAAAGGA
CAGGTTGTAGAGGGGCCCAGCCTTGGCCTCAGACTGACAAGGACTGAGAG
AGTGAGAGAGAGATTTAAAGACAGGAGAGTGGGTGTATGTATGGAAGCCA
TAAAAGGGTGGGGATGTGTTTCAGTTTCCGGGATATGAAAATCAGGCCAT
AATCAATAGGGGGCAGGAATTCATTTGAATGTCTGTTGTCCTTCAGTTTT
CAATGTTGCTTGATAGAATTTCAAGTCCTGGATTAAGAAAGATAAATCTG
ATCTGGAAATTTGGAATAGACTGGAGTCACAACAGGAGCCAGAAAACCAA
TCAACAACACAAACAACAAAAGCTTCTGTGAGAATTGGCCTCCTTGAAGT
CAGAACACAGCCACAGGCAGAGAACCACAGAGAGTAGCTTTGGTCTTGTG
GAATAACAATGGTAAAGGCAGAGCCATAAACTCAGGAATGAACACAGCCG
TGCAAATCTCAGTGCATGGTGGTGGAGAAACATCTTACTTTAGAGAGTGA
AGGAAGGCTAAGAAACTGCAGTATGCTTTTTATTTTTCTGGATAAATGAG
GACCACTGCTTTATGTTGCCCAGGTATAGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_b20.g1 MSMg01no498_b20.g1 CHROMAT_FILE:
MSMg01no498_b20.g1 PHD_FILE: MSMg01no498_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:01 2005
         (535 letters)



>mm_chr10_72025784_72026718
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaattacagttaggctgtaagaacaaagactgaataaattattgattacggtagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cacagaattacagttaggctgtaagaacaaagactgaataaattattgattacggtagta 676

                                                                       
Query: 61  aggagactaactgcagatgggaagaactgactgaaaattcaattactagagtcagtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aggagactaactgcagatgggaagaactgactgaaaattcaattactagagtcagtaaag 616

                                                                       
Query: 121 gacaggttgtagaggggcccagccttggcctcagactgacaaggactgagagagtgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gacaggttgtagaggggcccagccttggcctcagactgacaaggactgagagagtgagag 556

                                                                       
Query: 181 agagatttaaagacaggagagtgggtgtatgtatggaagccataaaagggtggggatgtg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 555 agagatttaaagacaggagagtgggtgtgtgtatggaagccataaaagggtggggatgtg 496

                                                                       
Query: 241 tttcagtttccgggatatgaaaatcaggccataatcaatagggggcaggaattcatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttcagtttccgggatatgaaaatcaggccataatcaatagggggcaggaattcatttga 436

                                                                       
Query: 301 atgtctgttgtccttcagttttcaatgttgcttgatagaatttcaagtcctggattaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgtctgttgtccttcagttttcaatgttgcttgatagaatttcaagtcctggattaaga 376

                                                                       
Query: 361 aagataaatctgatctggaaatttggaatagactggagtcacaacaggagccagaaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagataaatctgatctggaaatttggaatagactggagtcacaacaggagccagaaaacc 316

                                                                       
Query: 421 aatcaacaacacaaacaacaaaagcttctgtgagaattggcctccttgaagtcagaacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aatcaacaacacaaacaacaaaagcttctgtgagaattggcctccttgaagtcagaacac 256

                                                                  
Query: 481 agccacaggcagagaaccacagagagtagctttggtcttgtggaataacaatggt 535
           ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 255 agccacaggcagagaaccacagagagtagctgtagtcttgtggaataacaatggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)