BAC Information

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BAC

Clone NameMSMg01-498E20
Chromosome10 (Build37)
Map Location 82,473,315 - 82,473,870
singlet/doubletsinglet
Overlap geneChst11
Upstream geneLOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498E20.T7 (MSMg01no498_e20.b1)MSMg01-498E20.TJ (MSMg01no498_e20.g1)
ACCAG574661AG574662
length764762
length of high quality
(start - end)
520 (58 - 577)556 (75 - 630)
definitionCHROMAT_FILE: MSMg01no498_e20.b1 PHD_FILE: MSMg01no498_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:16 2005CHROMAT_FILE: MSMg01no498_e20.g1 PHD_FILE: MSMg01no498_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTGTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAAATCACTGCCTTTCCCCCCAAGCCTCTACGAGAAATGTCACATAGC
CTCAGTTAGACTACAGGATCCTCTACGAGAAATGTCACATAGCCTCAGTT
AGACTACAGGATCCTTTCTCCAGCTAAGAAGCTGTTCAGCCAGCACCTGA
GATTCCCGAGATGCTTTCCCACACTAATGAGGCATTTCGGTGCCCTAAGC
CCTCAGCCAATGACCTTTGCCCACCCTGGATGTTCCCATCCTCAGTCCCC
ACAAACTCTATAAGCCTTGAATCACCATAAGTAAAGTTGATCTGCCTCCC
GATAGCTGGTCCTGGTGTGGTTATTTGCCATATGTACTCACAGGGCTCCC
GAACCCCAGCTCGTTGTCTCTGATCCCACTGCCTCCATGGACTGTATCAG
CCCACCATCCACGAGAGCCAGGAGAACCACATTCTAGCAATGGAATATGC
CAAGGGGCCGTGAAGGGACGGAGGTAAGCACTCAGGCCTTGTAAAGCGAT
CTATGCAGCAAACACTCTATGAAGAAGACAAGATGGTGTTCTGCATGGTA
GAAGGCTGCCCACAGCAACGCTGGCTTGTGGCTGGNGATGCACTCAGTGA
GCAAGCCATGGGTTGAGTCTGAGCTATCATTCCTCCCTCGGAACCTTATT
TCCCTGCCCCCCATCCTGTTGAGGGTCCTGGGAGAAAAACCGGGGAACAA
CTGGGAACAACTGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGCTCAGGCTGGTCTAGAA
TTTGCAGTCTACAACCACAGCTAGAATCTTCCTCAGTGGCTAGGTGGACA
GACCTGTACCACCATGCCCAGCAACCCTTTGATTGATGCCAGAGCCTGTA
TCATGAAGAGCAGGGTCCTGCATGGGTAGTCTCTGTCTGCTTAGAAATGG
TCTTATCTTTACTGTATGACTCGGAGTCTTCTTTTGACATTTTCAATATA
TTGTTACCTTTCATTTAATTGTGAGCGTGTGTGCGTGCATGTGTGTGCGT
TTGTCTGTTCAGGTGACAACTTTCAGGAGTTGGTTATGTCTTTCCACTGT
GTTTGTCCCAGGGAATGAATTTAAGGGGTCAGATTTGGCCCCTTTACCTG
CAGTGCCTCCTCTCTGGCCCTGGTTTTTATGTTCTTTGTACGTTATTCTT
TTATCATTATTTTAGTATGTTGGAGGCTTTTTTTGTGACAGGGTCAGACT
GACCTGGAACTCAGTATGTCGCTCAGGCCTTGGTCCTTCCAATGCTATAA
CTACAGATGTGTGTGCGCCTGTGCTCAGCTGAGAACAGCCTATCTTGTTC
TATTGGCAGCTCCTTAAACTATCATTTGTCTTGACTGCATGGAAGCTGTG
TTGAATAACTGCTCTGCACTGTGCAGGCTTGAGTTAGGGACTCTGTGGGG
CACGTTTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_e20.g1 MSMg01no498_e20.g1 CHROMAT_FILE:
MSMg01no498_e20.g1 PHD_FILE: MSMg01no498_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:16 2005
         (556 letters)



>mm_chr10_82473115_82474070
          Length = 956

 Score = 1052 bits (544), Expect = 0.0
 Identities = 553/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagctcaggctggtctagaatttgcagtctacaaccacagctagaatcttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagctcaggctggtctagaatttgcagtctacaaccacagctagaatcttcctc 260

                                                                       
Query: 61  agtggctaggtggacagacctgtaccaccatgcccagcaaccctttgattgatgccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggctaggtggacagacctgtaccaccatgcccagcaaccctttgattgatgccagag 320

                                                                       
Query: 121 cctgtatcatgaagagcagggtcctgcatgggtagtctctgtctgcttagaaatggtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtatcatgaagagcagggtcctgcatgggtagtctctgtctgcttagaaatggtctt 380

                                                                       
Query: 181 atctttactgtatgactcggagtcttcttttgacattttcaatatattgttacctttcat 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttactgtatgactcagagtcttcttttgacattttcaatatattgttacctttcat 440

                                                                       
Query: 241 ttaattgtgagcgtgtgtgcgtgcatgtgtgtgcgtttgtctgttcaggtgacaactttc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattgtgagcgcgtgtgcgtgcatgtgtgtgcgtttgtctgttcaggtgacaactttc 500

                                                                       
Query: 301 aggagttggttatgtctttccactgtgtttgtcccagggaatgaatttaaggggtcagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagttggttatgtctttccactgtgtttgtcccagggaatgaatttaaggggtcagat 560

                                                                       
Query: 361 ttggcccctttacctgcagtgcctcctctctggccctggtttttatgttctttgtacgtt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ttggcccctttacctgcagtgcctcctctctggccccggtttttatgttctttgtacgtt 620

                                                                       
Query: 421 attcttttatcattattttagtatgttggaggctttttttgtgacagggtcagactgacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcttttatcattattttagtatgttggaggctttttttgtgacagggtcagactgacc 680

                                                                       
Query: 481 tggaactcagtatgtcgctcaggccttggtccttccaatgctataactacagatgtgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggaactcagtatgtcgctcaggccttggtccttccaatgctataactacagatgtgtgt 740

                           
Query: 541 gcgcctgtgctcagct 556
           ||||||||||||||||
Sbjct: 741 gcgcctgtgctcagct 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)