BAC Information

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BAC

Clone NameMSMg01-499E10
Chromosome10 (Build37)
Map Location 86,223,647 - 86,389,281
singlet/doubletdoublet
Overlap geneNt5dc3, C630002B14Rik, Stab2
Upstream geneLOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Fabp3-ps1
Downstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499E10.T7 (MSMg01no499_e10.b1)MSMg01-499E10.TJ (MSMg01no499_e10.g1)
ACCAG575398AG575399
length761787
length of high quality
(start - end)
242 (77 - 318)324 (350 - 673)
definitionCHROMAT_FILE: MSMg01no499_e10.b1 PHD_FILE: MSMg01no499_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:37 2005CHROMAT_FILE: MSMg01no499_e10.g1 PHD_FILE: MSMg01no499_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,223,647 - 86,223,888)(86,388,958 - 86,389,281)
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTCGAAAATGCGCGGA
ANCNTAGCAGACTACTATTATTTCTACTAGGAGAAAATGAAAAGTAAGTT
TCTATAGAGTGTTTCAATAACGTGTGTGTCTCTCTCCCAGTTCTCTAATG
CCTGGGGTGTGCTCTGACCTATTGGGCCATCTTGCTTCTTTGTCTCTAGT
CCTGCTCATAAACTGAGTGGGGTGCACCCTTCCTGAGGGCCCTGCCCTCC
TGTGTTTGTCAGGGCATCTATTACAAAGCCTTCTGAAAACTCTGGACCCA
CAGAGTGGAGGCTTTGCATCTTTTTTGGACACAGGACCCAGGTCTCTCAC
TGTGAGTGTTTGTGAGTGGGCGTGTTTCATTCAGGCTTCTGCGTAGGCCG
CAGCCTGGCTGCTGTCTGCAGGACCCCATCCCACTGTTCTGTCCCCTAAC
TCCAGCAGGCTTTGAGATGTGGCCCTGTCCTCAACTCCTTACACAGCTAA
GTGGAGAAGAGGGCGGTAGGGATCCTCACAGGGCCCTGATGTGAGCATGC
CTAGATCTGTTTTTGCTGGCTGCAGGGTTGTTAACTCCCAGCAATTGTCC
TGTCACAGCAGGGTCAGCTGACAGTGCTCGGGGCTGCTCAGTTGTGAAAT
GTCGCTAGGGTTTGGAGCTTGGTTCCCCTGACCTCCTCTCCCCTCCTCTT
CTCTTCCCTTTCATCCCTTCCCTTCCCTTTCCTCCCCTCTCTTCCCTTTT
CTCCCCTCCCC
GGGGAGTGAGTGGGAGGGAAGCGATGATATGGGTAGGCTGGNGGCCGCCT
GGCCTTCAAATAAAGGNGAACNANAGAAGGACTGCCAAAAAACAGGGTCC
ATCTTAGAGCTGACCATCTCACAGATACATATGAGCTGGGCCTAACATCT
TAGATGGGAAAACAAGCTGTCTCCTCCATCTTGGTTTTCTCAGGCCACCT
GTCAATATACTTTGTCTGGTGTTTGGAGCTGTGTTTGCCAAGAGGGCTAT
GAAGGAAATGGTGTCCTGTGCTATGGAAATGTGCTCATGGTAAGTCCCTA
GTGAGAACCTCAAGTGCAAAGTCACAGACAGAACACATATCTTGTTATTG
GACGTTTCAGCTCAGATAGCCTTAGACATGCTCCATCTACAGACCCTTTG
TCCAAGAGATTTTTAGATGAAGACAGCTGGTTTTCTATAGATACCTCATG
TTTGGTGGGTCCCTCATTTTCACAGGCTATAGCAGTTTTTTATCTGGCAC
TTTCTGCACACCGGCTAGTCCTGAAACTTTTATTTGCTAATTTGTCTCAA
ACTTCCCAAGTGAGCAACTGATCTCCCTCTGCTGGGCTACATGGGATAGC
TGCCTTAGTACCCCGTTGGGTCCCATGCCTCCCATGGGTAGCCAGAACAC
CCTGGGTTTACCCATCCTGAATGAGGTCGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTACATGCATGCACATGTGCTCAAGAATATGCCTTCTG
TGTACAAGGTGTCTTTCTAGGTCCTTTATGCAGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_e10.b1 MSMg01no499_e10.b1 CHROMAT_FILE:
MSMg01no499_e10.b1 PHD_FILE: MSMg01no499_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:37 2005
         (242 letters)



>mm_chr10_86223447_86224088
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggagaaaatgaaaagtaagtttctatagagtgtttcaataacgtgtgtgtctctctc 60
           |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 201 ctaggagaaaatgaaaagtaagtttctatagactgtttcaagaatgtgtgtgtctctctc 260

                                                                       
Query: 61  ccagttctctaatgcctggggtgtgctctgacctattgggccatcttgcttctttgtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagttctctaatgcctggggtgtgctctgacctattgggccatcttgcttctttgtctc 320

                                                                       
Query: 121 tagtcctgctcataaactgagtggggtgcacccttcctgagggccctgccctcctgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcctgctcataaactgagtggggtgcacccttcctgagggccctgccctcctgtgtt 380

                                                                       
Query: 181 tgtcagggcatctattacaaagccttctgaaaactctggacccacagagtggaggctttg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagggcatctactacaaagccttctgaaaactctggacccacagagtggaggctttg 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no499_e10.g1 MSMg01no499_e10.g1 CHROMAT_FILE:
MSMg01no499_e10.g1 PHD_FILE: MSMg01no499_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:37 2005
         (324 letters)



>mm_chr10_86388758_86389481
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggacgtttcagctcagatagccttagacatgctccatctacagaccctttgtccaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggacgtttcagctcagatagccttagacatgctccatctacagaccctttgtccaagaga 465

                                                                       
Query: 61  tttttagatgaagacagctggttttctatagatacctcatgtttggtgggtccctcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tttttagatgaagacagctggttttctatagatacctcatgtttggtgggtccctcattt 405

                                                                       
Query: 121 tcacaggctatagcagttttttatctggcactttctgcacaccggctagtcctgaaactt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcacaagctatagcagttttttatctggcactttctgcacaccggctagtcctgaaactt 345

                                                                       
Query: 181 ttatttgctaatttgtctcaaacttcccaagtgagcaactgatctccctctgctgggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttatttgctaatttgtctcaaacttcccaagtgagcaactgatctccctctgctgggcta 285

                                                                       
Query: 241 catgggatagctgccttagtaccccgttgggtcccatgcctcccatgggtagccagaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catgggatagctgccttagtaccccgttgggtcccatgcctcccatgggtagccagaaca 225

                                   
Query: 301 ccctgggtttacccatcctgaatg 324
           ||||||||||||||||||||||||
Sbjct: 224 ccctgggtttacccatcctgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)