BAC Information

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BAC

Clone NameMSMg01-499K14
Chromosome10 (Build37)
Map Location 46,457,363 - 46,457,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664781
Downstream geneLOC100041632, LOC668252, LOC100042387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499K14.T7 (MSMg01no499_k14.b1)MSMg01-499K14.TJ (MSMg01no499_k14.g1)
ACCAG575690AG575691
length752753
length of high quality
(start - end)
328 (329 - 656)678 (74 - 751)
definitionCHROMAT_FILE: MSMg01no499_k14.b1 PHD_FILE: MSMg01no499_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:06 2005CHROMAT_FILE: MSMg01no499_k14.g1 PHD_FILE: MSMg01no499_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGCTGGGCGGA
ANNCAAANCTGTTACCAACAGGAGGGCCCAGGAACTTTTTAGCTTGTTTT
GCACTGGTCGGTGGAGGAATATCGAAACACAGTCTCTTTTTCTAGCTGCT
TCAACAGGTAGGCCACCGGACTCTTCTAAGGACTCAGCTTCTGTATTAGC
ACCCCTTTTGTTATCTCTTAAACACATTGATCTTCAGCCAAAAGCTTTTT
TTTGTTGCCAGGTACTATCTAAGTTTTCTAATTTTCCTGACTTTTGTGGC
CAGCATTTCATTTCTCTTATCNTTTTGTCTCACAGCACAGCTCTGATTCT
GACTCTGATCTCTGTCTTTGTCTTAACTTTCTGTTACCTTGGTCAGATTG
TTGGGACTTTCTAGTCCCACAGAGACGAGACCCCCATCAGAGCCTGGCAG
TTAGACTCACAGGTGCTCCTTACCTTGGACAGAAGCCCCAAGTGGGCGGA
TGCCTCCCTCACTGGAACTTGGAACAGACTCACTGCCAGCAGCTCAGGGT
GGTGCCACCTTCTGAGAAGAGGGAACTTTAGAGCAGAGACGGGAGTGCAG
CTCTCACAGCTGGCTGCAACCGGCACTTATCTTAAAGTGAAAGCAGTTTT
TCTGTTATCTATATACGGGATGGGAGGGACAGGGGAATGAGAAGCTGCCT
GGGAACCTGCAGCGCTCTTGGCCGGCTACTTCGAACAGCCTCCTCCTCTT
TT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAATTCAGGTTTATTTCTTCTTTGTGTTTTGATA
AAGAATTTAAAGCTGAGTTGAGTAGGCATGGAGAGATCTGGAGGAAGTTG
TGGGAGGACAAGAACATGAACAAAATATATTTGAATTTGAAAAATGTTTT
AAACTATGAAAAATATAATCAAAATTATTTTTTATGATCATTGTGTTGGC
TTAAGGTTCTTGTTCTTTCACCTGGTCGTGTTAACATGTCTATTATTGTT
GTCCTTCTTCATGTCACATTGTTTTTAGTCATGTTAATGATACTTTATGG
GTATTTTTTCTTATAGTCCTAAGAGAAATTAGCTCACAGCAAATTCTCTG
ATCCTCTGGCTCTCATATATTTCCACCCTGTCTTCCTTAAAATAACCCCT
AAGTCCTAGTATTCTTTTGTAGATGTATTCTTTGAGATTGAGCTCTATAA
CCCTACATTTTTGTTGGTTGTGATTTTCTGTAGTGGTCTCTCTCTATTCC
AAAAATAAGTTCCTTTGATGAGGGTTTGATGAAGTTTCTTTGTCATGTGA
AATTTTATACCAGCTCTGAAGTTCAAGTTCTGTCACAAATTGTTAGCTAA
TACACTATATATTAATAACAAAGACATTTTTATAGCCTTCTTCCTCAGGG
TCACTAGGATCTGTCTCTTTGACTATCTGAAACTCCCATGCTGATTATTT
GTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_k14.g1 MSMg01no499_k14.g1 CHROMAT_FILE:
MSMg01no499_k14.g1 PHD_FILE: MSMg01no499_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:06 2005
         (678 letters)



>mm_chr10_46456662_46457739
          Length = 1078

 Score =  714 bits (369), Expect = 0.0
 Identities = 375/377 (99%)
 Strand = Plus / Minus

                                                                        
Query: 302  gaaattagctcacagcaaattctctgatcctctggctctcatatatttccaccctgtctt 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 gaaattagctcacagcaaattctctgatcctctggctctcatatatttccaccctgtctt 1019

                                                                        
Query: 362  ccttaaaataacccctaagtcctagtattcttttgtagatgtattctttgagattgagct 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1018 ccttaaaataacccctaagtcctagtattcttttgtagatgtattctttgacattgagct 959

                                                                        
Query: 422  ctataaccctacatttttgttggttgtgattttctgtagtggtctctctctattccaaaa 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  ctataaccctacatttttgttggttgtgattttctgtagtggtctctctctattccaaaa 899

                                                                        
Query: 482  ataagttcctttgatgagggtttgatgaagtttctttgtcatgtgaaattttataccagc 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  ataagttcctttgatgagggtttgatgaagtttctttgtcatgtgaaattttataccagc 839

                                                                        
Query: 542  tctgaagttcaagttctgtcacaaattgttagctaatacactatatattaataacaaaga 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  tctgaagttcaagttctgtcacaaattgttagctaatacactatatattaataacaaaga 779

                                                                        
Query: 602  catttttatagccttcttcctcagggtcactaggatctgtctctttgactatctgaaact 661
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 778  catttttatagccttcttcctcagggtcactaggatctgtctctttgaatatctgaaact 719

                             
Query: 662  cccatgctgattatttg 678
            |||||||||||||||||
Sbjct: 718  cccatgctgattatttg 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)