BAC Information

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BAC

Clone NameMSMg01-499O20
Chromosome10 (Build37)
Map Location 47,122,984 - 47,123,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252
Downstream geneLOC100042387, LOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499O20.T7 (MSMg01no499_o20.b1)MSMg01-499O20.TJ (MSMg01no499_o20.g1)
ACCAG575892AG575893
length7151,395
length of high quality
(start - end)		642 (66 - 707)---
definitionCHROMAT_FILE: MSMg01no499_o20.b1 PHD_FILE: MSMg01no499_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:27 2005CHROMAT_FILE: MSMg01no499_o20.g1 PHD_FILE: MSMg01no499_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCGNAAACTCCGCGGAATCAAATAC
TGGTTGCACATAAATGCTCACTGCCATGTAAATAATTTTGTGCCCATATA
AGAATGATCATTTGTACACACATAATAATGGCAGTGTACACACATAATAA
TCATCATATGTACACACAAAATAATGTCTGTACACATAATAATGGTCATG
GGCATACATGATGATAATCATGTGTAAACACGTGGTGATAAGGAATGAAG
GCATTTAAAAACAATTCAGTTTCCAAAAGCAGAAGTTCCTTAGTTTCTTC
TTTTCCTCTTACTATCTTCTTTCCTTCTTCTTCTGCAACTTCCTTTTCTT
CCTTCCCCTCTGTCTCTTCTCTTTCTCCTTCCTTTGTCTCTGATCTCTAA
TTGTCCAATGTTTCTCCACAATAATGTCTTTAATTAATGAATATAAAGTG
TGGTGAAGTATCTCAGGTTTGTAGGGTTCTAATCTGGCCACTATTTTTCA
TCCTCGGCTAGCTCTACATATCTTCCACTCAGAGTCTTTGAATCTGACTT
TTGCCTTGAGGATTTCCTAATGATATACACACTACACTTTTCAGATTTTG
GTAACAACTTTATTTTCTCCTCTCCACTGATCTGTTTTCTGACTATTATT
CCAAATATAATATTTCTTCCTTCTTTGTCACTATATGCAGCTCATGGTCT
TCAGGATTCAGCAGA

CTCTGTCTCTGTTTTATTCGGTTCCGGTCCCTGGGGCGGACGCGGCCAGG
GCGTGTCTGCTCTCTCTTCTTCAGCCTCAGTGCGGCGGCCGCTTGTGATT
GTGCGGAATATGGTTTCTCCCCCTACGCGGGGGTGGGGCGCGGTTGTGTG
CGGAGTCTCTCTCCACCTAATCGACGAGGACAATCTGTCGAACGATCTCT
TGCGGTGTGATCCTGGTGTGGTTGTTGTGGAGACGAGTCCGAAGCGCTGT
TGTTCGTATGTATAACGCAGTGAGGTATTCTGCGTGTCGAGCTGTAGGTG
TGTTTCTGATCGTCACCGAACGCTACCCGCGCCCGCCCCCCGCCCGACCT
CTCCTTCCTACGCGACCTTGCGGAGCGTTGCGTTGATTCTGTATTCGGAT
CGCTGGGCTCGCCATAGCGAGGTTAATAACCGATGCCTCCGCGCGAGGAG
TGCTCTTTATTTGTACTTTGTGGCGTGGCGGATGCCGTCGCGGTTTGGCC
TTAGCTGTGCTGGCTAGTGTGTCGGAGAGACCTGGCGAGACGGAACGGGG
GCGTGCGGCGCGCGGTGTCGACTCGTTTTGGCGCTCGTCTCTCTGTGCTC
GCCGCCCCATTATGCGTGCGTGGAATATGCTACCATACTCAATTAACTCT
TCAACCCTCCATCGTTGTAGTATTTGTTTTTATACCTACTATTATGTCTG
TCTACGGGCTGGATTACTATCGATTGTCTCCGTTATCTTACTTCGCGGTG
GATGCCGGCCTTTCTGTTGTAGTATTATGCCGAACATGCGCCCGGCTGTC
GACGGAACTCCAGCTACCGTGAGCGCGCGTGCCGTTGACCGCTTCGTGCG
GCGTGATGCGTTCATTTTGCCGCTGTTACTGCGTATCGAACCCGAGACGA
GGCGTTGTTTACTCACTCGTGTGAGAGGGCGACTTGAGTACTCTACTAGC
ATTGCTCCCACACCCTATAGTACCCTGATTGCTAGGCTCGTTGTTCGTAA
TCTGTCATGTATGTGAGGAGACGTCTGTGNTGTAACGCTCCGGCTGCGTA
TACAGTTCCGCCACCAATCATAAACGCACTCGTTCGCGTTATCGCCTAAC
TCCTGCCTGTGTGTACAGTATCGGGCACGCGCGCCCTCGTGCGCGCGCGC
AGTGTAGGACCGCCACTATCACGCACAGGTTACGCGGATCGCTCATATGT
GTTTGAGTGATGTGACGATACGCGTAGCACGCTCCATAGCGAGCGCGCGA
CGTGCCACACGTGTGAGGCGCGTCACGCTATAAATGATGGTATGAGATGC
TTATGATGAGCGTCACTCTGTGTATACGTTACTGCCGCGACGCACCGGCT
AGGCGACGAGATCGTGTGTGGATGTGCGCCGCGTCTGCTGTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_o20.b1 MSMg01no499_o20.b1 CHROMAT_FILE:
MSMg01no499_o20.b1 PHD_FILE: MSMg01no499_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:27 2005
         (642 letters)



>mm_chr10_47122464_47123505
          Length = 1042

 Score =  963 bits (498), Expect = 0.0
 Identities = 516/522 (98%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                        
Query: 122  taataatggtcatgggcatacatgatgataatcatgtgtaaacacgtggtgataaggaat 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 taataatggtcatgggcatacatgatgataatcatgtgtaaacacgtggtgataaggaat 983

                                                                        
Query: 182  gaaggcatttaaaaacaattcagtttcc-aaaagcagaagttccttagtttcttcttttc 240
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 982  gaaggcatttaaaaacaattcagtttccaaaaagcagaagttccttagtttcttcttttc 923

                                                                        
Query: 241  ctcttactatcttctttccttcttcttctgcaacttccttttcttccttcccctctgtct 300
            ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  ctcttactacctcctttccttcttcttctgcaacttccttttcttccttcccctctgtct 863

                                                                        
Query: 301  cttctctttctccttcctttgtctctgatctctaattgtccaatgtttctccacaataat 360
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  gttctctttctccttcctttgtctctgatctctaattgtccaatgtttctccacaataat 803

                                                                        
Query: 361  gtctttaattaatgaatataaagtgtggtgaagtatctcaggtttgtagggttctaatct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  gtctttaattaatgaatataaagtgtggtgaagtatctcaggtttgtagggttctaatct 743

                                                                        
Query: 421  ggccactatttttcatcctcggctagctctacatatcttccactcagagtctttgaatct 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  ggccactatttttcatcctcggctagctctacatatcttccactcagagtctttgaatct 683

                                                                        
Query: 481  gacttttgccttgaggatttcctaatgatatacacactacacttttcagattttggtaac 540
            | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  gtcttttgccttgaggagttcctaatgatatacacactacacttttcagattttggtaac 623

                                                                        
Query: 541  aactttattttctcctctccactgatctgttttctgactattattccaaatataatattt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  aactttattttctcctctccactgatctgttttctgactattattccaaatataatattt 563

                                                      
Query: 601  cttccttctttgtcactatatgcagctcatggtcttcaggat 642
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  cttccttctttgtcactatatgcagctcatggtcttcaggat 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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