BAC Information

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BAC

Clone NameMSMg01-500D11
Chromosome10 (Build37)
Map Location 123,398,429 - 123,527,626
singlet/doubletdoublet
Overlap genenone
Upstream geneD630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
Downstream gene4930503E24Rik, LOC671416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500D11.T7 (MSMg01no500_d11.b1)MSMg01-500D11.TJ (MSMg01no500_d11.g1)
ACCAG576110AG576111
length738676
length of high quality
(start - end)		117 (48 - 164)614 (57 - 670)
definitionCHROMAT_FILE: MSMg01no500_d11.b1 PHD_FILE: MSMg01no500_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:49 2005CHROMAT_FILE: MSMg01no500_d11.g1 PHD_FILE: MSMg01no500_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,527,510 - 123,527,626)(123,398,429 - 123,399,042)
sequence
AACACTAAATGCAGACCATCCGCGGAATTCTGACGATTCCACTCTAAGCA
GACACTGATCAATGCTCTCCCTTCTCATGGCTCCCTATGTAGATCAAACT
ACTTTCAAAACAACCCCGCAGAGAGGGCTGTGGGATTGCTAGAATTTCGG
GCTCACCGTTTGTGTTTACCTGTTTGGGTTGTGTACACAAGCAGTTGGAG
GGGTGCTGTGACACAAATCACTGGTCATAAAAGTCATANGGAGCAGGGTC
ATCCACCCGTTTTATGCGCATTTAAAGTCCAGCTGTTTGTCTTTCTCACT
TTACCACCCCTTGTCAAAACTAATCGAAAAATTTTTTTAATCCCCCCGCG
CGGGCGCAATGTTTTCTTATTTATTTTCCCCTAAATCTTCAAAAGGGGGG
TTCCTTTTTTTAAAAAAAAACTTTTTTCTCCTCTTTTTCCTTCCTTCTTG
GGGAAATAAAAAAATTTTTTTTTATAAACCCCCCCCTCCCCCCCTTTTTC
CCTCTCTCTATGGGGCGTTTTTGGTGGGCGCTTTTCGCTCTTAAATTTAG
GGTGGTTTTTAATTTTTTTTTACCCCTTTGAACAAATTCTATTCCTGCCT
TTTTCCTTTTACCCTTTCCTTTCATTTATTTCTCTTATTTTTTNCNTTCA
CTTTCTTCTTCTCTCCGTACATCCAATTATTTTCTATTTTCCACCTCTTC
CTTTACCTCTCTCACTTTTTTTTCACTTTTCATTTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGCGAA
AATTCACATTAGCATAGGCAGGGTAAAATAATGCTATGATAAAATTGAGG
ATCACACGCCATATTTTTATCTTCCTCATCAGGACACTAGAGGAAGAAGG
GAAGCAGATAAGCTTCACTCCTTTAGTTTTCTCATAAAATGGTACCTACT
CATGAATATCTCAATTGTTTTAAATTGATGTCCTTTATTGTTTAAGATTG
TCATCTTTCTCATTATTATTGTTTTGATTTTAATTATTTGATCTGTTTTA
TTATTTATTTCATTATTCATTAGGTTTGCCATGACATAAGACATATGAGT
ATTACCTGTGTGTGTGTATTTGTATGTGTGTGCTTTTGTGTTTGTACTAT
GTCATTGTATCTATACACCTGTGTGCTGCATATGTATTATTTTTTGAGAA
CTATATTTTGTGATTCTGCCAGTTTTTGTGCCCTTCGCTTTGTTAGTTAT
TCATTATGATCATTTATGAATCTCTCAATGCAGAGTGAGGCCTGGGACTG
AGGAGGGACAGTGTGATTAATGAATAAAGACTTTTGTATGATCTAGGAAT
TTTATTTTTTCTTATATTTATTGTGTGAACTAAGCTATAGAGTTGAGAGA
GATTTGGAGTGGCTTATGAAATATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_d11.b1 MSMg01no500_d11.b1 CHROMAT_FILE:
MSMg01no500_d11.b1 PHD_FILE: MSMg01no500_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:49 2005
         (117 letters)



>mm_chr10_123527310_123527826
          Length = 517

 Score =  211 bits (109), Expect = 1e-59
 Identities = 115/117 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagacactgatcaatgctctcccttctcatggctccctatgtagatcaaactactttca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 317 gcagacactgatcaatgctctcccttctcatggctccctctgtagatcaaacttctttca 258

                                                                    
Query: 61  aaacaaccccgcagagagggctgtgggattgctagaatttcgggctcaccgtttgtg 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaacaaccccgcagagagggctgtgggattgctagaatttcgggctcaccgtttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no500_d11.g1 MSMg01no500_d11.g1 CHROMAT_FILE:
MSMg01no500_d11.g1 PHD_FILE: MSMg01no500_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:49 2005
         (614 letters)



>mm_chr10_123398229_123399242
          Length = 1014

 Score = 1149 bits (594), Expect = 0.0
 Identities = 609/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattagcataggcagggtaaaataatgctatgataaaattgaggatcacacgccatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattagcataggcagggtaaaataatgctatgataaaattgaggatcacacgccatattt 260

                                                                       
Query: 61  ttatcttcctcatcaggacactagaggaagaagggaagcagataagcttcactcctttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatcttcctcatcaggacactagaggaagaagggaagcagataagcttcactcctttag 320

                                                                       
Query: 121 ttttctcataaaatggtacctactcatgaatatctcaattgttttaaattgatgtccttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttttctcataaaatggtacctactcatgaatatctcaattgttttaaatttatgtccttt 380

                                                                       
Query: 181 attgtttaagattgtcatctttctcattattattgttttgattttaattatttgatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 381 attgtttaagattgtcatctttctcattattattgttttgatttttattatttgatctgg 440

                                                                       
Query: 241 tttattatttatttcattattcattaggtttgccatgacataagacatatgagtattacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttattatttatttcattattcattaggtttgccatgacataagacatatgagtattacc 500

                                                                       
Query: 301 tgtgtgtgtgtatttgtatgtgtgtgcttttgtgtttgtactatgtcattgtatctatac 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgtatttgtatgtgtgtgcttttgtgtgtgtactatgtcattgtatctatac 560

                                                                       
Query: 361 acctgtgtgctgcatatgtattattttttgagaactatattttgtgattctgccagtttt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 acctgtgtgctgcatatgtattattttttgagaactatattctgtgattctgccagtttt 620

                                                                       
Query: 421 tgtgcccttcgctttgttagttattcattatgatcatttatgaatctctcaatgcagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgcccttcgctttgttagttattcattatgatcatttatgaatctctcaatgcagagt 680

                                                                       
Query: 481 gaggcctgggactgaggagggacagtgtgattaatgaataaagacttttgtatgatctag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggcctgggactgaggagggacagtgtgattaatgaataaagacttttgtatgatctag 740

                                                                       
Query: 541 gaattttattttttcttatatttattgtgtgaactaagctatagagttgagagagatttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattttattttttcttatatttattgtgtgaactaagctatagagttgagagagatttg 800

                         
Query: 601 gagtggcttatgaa 614
           ||||||||||||||
Sbjct: 801 gagtggcttatgaa 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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