BAC Information

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BAC

Clone NameMSMg01-500F24
Chromosome10 (Build37)
Map Location 78,848,432 - 78,849,011
singlet/doubletsinglet
Overlap geneEG624845
Upstream geneLOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709
Downstream geneEG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500F24.T7 (MSMg01no500_f24.b1)MSMg01-500F24.TJ (MSMg01no500_f24.g1)
ACCAG576231AG576232
length777687
length of high quality
(start - end)		124 (61 - 184)601 (61 - 661)
definitionCHROMAT_FILE: MSMg01no500_f24.b1 PHD_FILE: MSMg01no500_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:00 2005CHROMAT_FILE: MSMg01no500_f24.g1 PHD_FILE: MSMg01no500_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCGCTAAACGACTCCTATATTTCGAAATCCGCGGAATTCTGAGGATT
GCCTCTGCCCGGTGCGGGAGTGCTTTGCCTGAGCATCAGCAGCAGACATC
TTGGTTCCGGGATCCCACGGAGTGTATCCTGTACAGGCAGGTGACCATTT
TCCCGGACAGAGGATAGGGACCTGCCCGGCGCAGGAACGCTTTGCCTGAG
CATTGGCAGCAGACATCGTAGTTTCGGGACCCTGCCGAGTGTACCCTGCA
CAGACATCTTAGTTTCAGGACCCCCNCCGAGTATTTCTGCCAGTGCAAAT
TTTTATGGAAGGCATGAAAATCTTCACGAATTAACCCTCCTTTTAAACAG
CTCCCCCCCTATCTGGCCCCCCCCGAAGTACCCATTAAAATTTTGGGTGG
GGAGCCAAAATTTCTCCTTAAAAAGAATTGTATTCCTATAAAGGCCCCCG
TTTTTTAAAAAACTCCGGGGGAACCCCCCGGGGGAAAACACGGGGTTAAT
AAAAATTTCGCCCCCAAAAAAAGGCGGTTTATCCCAAAAAAATCTCCCCC
CCACCCCGGGAGTTGCTTTTATATCGTGGGGGCGCTCCCCCTCAAAAAAG
GGGGGTTTTNNGGAGGGTGNTTTTTTTTTAAAAAAAAAAATATATAATTA
TTTTTTTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNTT
TNNNTTTTCTNNNTTNNTNNTTTTTTNTTCTTTCTCTTTTTTCTTCTTCT
TTTCCTTTCTGCTTGTTATTTTCTCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACTTCCTCACAGCAGAGACAAAGGTGCAATTTCAGCATAG
AATTTAATCAATAATATTCTGAGTATTAAGTCTTTGGAATCTTGGCCAAG
TGGTGGTGGCACATGACTTTATTCCCAGCACTTGGAGGGCAGAGGCAGGC
AGATTTTTGAGTTTGAGGCCAGCCTGGTCTACAGACTGAGTTCCAGGACA
GCCAGAGTGATACAGAGAAACCCTGTCTCCAAAAAAACAAAAACAAAAAA
AAATTATTCAAAACAAAACAAAAAACAAAAAATGTAATCTTGAAAGCATA
CTTTAATGACACTTCCATTACATTTAAATGTGAATACTTTAGCTTTACTA
TAGTAGTTCCATAATTGTCTTATTTCATACAGTGGACCCAGAAACTATTT
CATTTTCCCAGTTGCAATTTCTGTGTTTGATCTGTTTTATGGCATTAGAA
AGTTTCTAAATTAATTTAATTACAACATTTTATTGCTAGGTTTTCTTCAA
CCCAGTTAATACAACTGANACAATAGTTAGACAAAGAAATTAAGTTATTG
TGAAGAGGCTGAAAGACAGACAGTCAAAGATGTAAGGGATGCAATTAAAA
AACTGAATACATGTTTTGTATAGAATTTTATAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_f24.g1 MSMg01no500_f24.g1 CHROMAT_FILE:
MSMg01no500_f24.g1 PHD_FILE: MSMg01no500_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:00 2005
         (601 letters)



>mm_chr10_78848208_78849211
          Length = 1004

 Score =  642 bits (332), Expect = 0.0
 Identities = 528/619 (85%), Gaps = 57/619 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcctcacagcagagacaaaggtgcaatttcagcatagaatttaatcaataatattct 60
           ||||||||||||||||||| || ||| |||||||||||| ||||||||||| ||||||||
Sbjct: 225 acttcctcacagcagagacgaatgtgaaatttcagcata-aatttaatcaacaatattct 283

                                                                       
Query: 61  gagtattaagtctttggaatcttggccaagtggtggtggcacatgactttattcccagca 120
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 284 gagtattaagtctttggaatcttggccaggtggtggtggcacatgcctttattcccagca 343

                                                                       
Query: 121 cttggaggg-cagaggcaggcagatttt-tgagtttgaggccagcctggtctacagactg 178
           ||||| | | ||||||||||  |||  | |||||   |||| ||||||||||||||| ||
Sbjct: 344 cttgg-gcgacagaggcaggtggataatctgagtacaaggctagcctggtctacagagtg 402

                                                                       
Query: 179 agttccaggacagccagagtga-taca--gagaaaccctgtctccaaaaaaacaaaaaca 235
            ||||||||||||||||   || ||||  ||||||||||||||| |||||||       |
Sbjct: 403 ggttccaggacagccag---gactacacagagaaaccctgtctc-aaaaaaa-------a 451

                                                                       
Query: 236 aaaaaaaattattcaaaacaaaacaaaaaacaaaaaatgtaatcttgaa-agcatacttt 294
           |||||||| | ||                        |||||||||||| | ||||||||
Sbjct: 452 aaaaaaaagtctt------------------------tgtaatcttgaaca-catacttt 486

                                                                       
Query: 295 aatgacacttccattacatttaaa-tgtgaatacttt-agctttactatagtagttccat 352
           |||||||||||||||||||||||| | |||||| ||| |||||||| |||||||||||| 
Sbjct: 487 aatgacacttccattacatttaaaat-tgaataattttagctttaccatagtagttccaa 545

                                                                       
Query: 353 aatt-------gtcttatttcatacagtggacccagaaa-ctatttcattttcccagttg 404
           ||||       |||||||||||||||||||||||||||| ||| ||||| | ||||||||
Sbjct: 546 aattcataatcgtcttatttcatacagtggacccagaaagctagttcatgtccccagttg 605

                                                                       
Query: 405 caattt-ctgtgtttgatctgttttatggcattagaaagtttctaaattaatttaattac 463
           |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 606 caattttctgtgtttgacctgttttatggcataagaaagtttctaaattaatttaattac 665

                                                                       
Query: 464 aacattttattgctaggttttcttcaacccagttaatacaactganacaatag-ttagac 522
           || |||||||||| ||| ||||||||||||||||||| || |||| ||||||| ||||||
Sbjct: 666 aatattttattgccaggctttcttcaacccagttaatgcatctgaaacaataggttagac 725

                                                                       
Query: 523 aaagaaattaagttattgtgaagaggctgaaagacagacagtcaaagatgtaagggatgc 582
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 726 aaagaaattaagttattgtgaacaggctgaaagacagacagtcaaagatgtaagggatgc 785

                              
Query: 583 aattaaaaaactgaataca 601
           |||||||||||||||||||
Sbjct: 786 aattaaaaaactgaataca 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1004
Length adjustment: 10
Effective length of query: 591
Effective length of database: 994
Effective search space:   587454
Effective search space used:   587454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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