Query= MSMg01no500_g14.b1 MSMg01no500_g14.b1 CHROMAT_FILE:
MSMg01no500_g14.b1 PHD_FILE: MSMg01no500_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:02 2005
(653 letters)
>mm_chr10_70309890_70310942
Length = 1053
Score = 1081 bits (559), Expect = 0.0
Identities = 577/587 (98%), Gaps = 8/587 (1%)
Strand = Plus / Minus
Query: 5 gaattctttctctttcc----aatgagtcacacagtgggaatttgcagtcatttcaagct 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gaattctttc----tccaggaaatgagtcacacagtgggaatttgcagtcatttcaagct 528
Query: 61 cttgtttcagaggttagaaaatctcctgttctgtgccagtattaagagtagtttgcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cttgtttcagaggttagaaaatctcctgttctgtgccagtattaagagtagtttgcctct 468
Query: 121 tttgtttttgaattgttggccacagagatgacgttagactaatccctatcatcttaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tttgtttttgaattgttggccacagagatgacgttagactaatccctatcatcttaccac 408
Query: 181 aagggaatcggcaacaggaaccaagtcagtaaagtgagcagctctactctctgcaggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aagggaatcggcaacaggaaccaagtcagtaaagtgagcagctctactctctgcaggaca 348
Query: 241 ctggcctgaacgctttacttggtttttaaagttcttctccagtgcaatcagtgtccacaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctggcctgaatgctttacttggtttttaaagttcttctccagtgcaatcagtgtccacaa 288
Query: 301 ttgcaagaagtctggggagacaaggttagccagcgtgagctccctcagatatcctagtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttgcaagaagtctggggagacaaggttagccagcgtgagctccctcagatatcctagtcc 228
Query: 361 ttgtattgagaaggctgggctgactccaggatgggcttcaaattcaggagacttggccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttgtattgagaaggctgggctgactccaggatgggcttcaaattcaggagacttggccta 168
Query: 421 aatctgtttctaagaactgaggaagtccaggcctcagaagctgccccaccacctgacctg 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aatctgtttctaagaactgagcaagtccaggcctcagaagctgccccaccacctgacctg 108
Query: 481 aagcaaggacaatgggtcagcagcagtttccagacttccccatcaacagtttccaaaccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aagcaaggacaatgggtcagcagcagtttccagacttccccatcaacagtttccaaaccc 48
Query: 541 ccaggccacagcaatgattctggaatgtccataaaaatagagcccag 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ccaggccacagcaatgattctggaatgtccataaaaatagagcccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_g14.g1 MSMg01no500_g14.g1 CHROMAT_FILE:
MSMg01no500_g14.g1 PHD_FILE: MSMg01no500_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:03 2005
(603 letters)
>mm_chr10_70094553_70095555
Length = 1003
Score = 1112 bits (575), Expect = 0.0
Identities = 596/603 (98%)
Strand = Plus / Plus
Query: 1 tgaccaagcacactttgctgtttcacccggttatccaagcgacacgctccacaaacctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaccaagcacactttgctgtttcacccggttatccaagcgacacgctccacaaacctgt 260
Query: 61 gtcctccaacgaggtggcttcatccacactatgagtacctctgccacccttttgggagga 120
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtcctccaacgaagtggcttcatccacactacgagtacctctgccacccttttgggagga 320
Query: 121 agggccaagtgaaaagcagtgacctgaagagtggggggctgggagggggggaagctcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggccaagtgaaaagcagtgacctgaagagtggggggctgggagggggggaagctcagc 380
Query: 181 aaaggaagaagcaaggaagagggaaggggtagacaagagctcccagtaaagcccatgatc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aaaggaagaagcaaggaagagggaaggggtagacaagagctcccagtaaagcccatgagc 440
Query: 241 tttaagggaagatgaagaaggtagcagtaacttgatgacacatgatttgaaaaacaagtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaagggaagatgaagaaggtagcagtaacttgatgacacatgatttgaaaaacaagtt 500
Query: 301 tcataaaggactttatttgtactatgtaatctaggtttctaccatattcagtaatgatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcataaaggactttatttgtactatgtaatctaggtttctaccatattcagtaatgatgt 560
Query: 361 attcttcatagtctatgggtgagacaatagagatgggatgaaagactacaacttgattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcttcatagtctatgggtgagacaatagagatgggatgaaagactacaacttgattat 620
Query: 421 tattattatttctattaggttatttactgaatgttcactttgtgactgagctattctgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattattatttctattaggttatttactgaatgttcactttgtgactgagctattctgca 680
Query: 481 catctgagagggaaaaatactgtcacaaatcaatcgtggtatctctctctatataacatg 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 catctgagagggaaaaatactgtcacaaatcaatcgtggtatctctctatatataacatg 740
Query: 541 caatctagtaggaaccttagttattccaaaacacaaaagttcaaatttaatatagtatca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatctagtaggaaccttagttattccaaaacacaaaagttcaaatttaatatagtatca 800
Query: 601 tca 603
|||
Sbjct: 801 tca 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
