BAC Information

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BAC

Clone NameMSMg01-500I10
Chromosome10 (Build37)
Map Location 95,663,793 - 95,817,381
singlet/doubletdoublet
Overlap genenone
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
Downstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500I10.T7 (MSMg01no500_i10.b1)MSMg01-500I10.TJ (MSMg01no500_i10.g1)
ACCAG576345AG576346
length695670
length of high quality
(start - end)
169 (54 - 222)555 (58 - 612)
definitionCHROMAT_FILE: MSMg01no500_i10.b1 PHD_FILE: MSMg01no500_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:10 2005CHROMAT_FILE: MSMg01no500_i10.g1 PHD_FILE: MSMg01no500_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,817,213 - 95,817,381)(95,663,793 - 95,664,347)
sequence
CGACTACTATAGTCCGATACTCCGCGGAATCTCTTTNGTTACAAAAAAAC
TGCAAACTCACAGAGTTCTGCCTCCTGGGTGTTGGTATTAAAGAAATGTG
CTACCACCACCCTGCTAGGATTAAAAATCTTAAACACATTCCAAAAGCCC
TCCCTGGTACACCCCATTGACCAGTGTCCTAAAGCCCTGAATATTGTCAA
GGCACAGGCTTTTTTGTAATTCATTCTGAAGTAGAACTTGCTTGTGACTC
AACTGCCTTCAAATCTACTATGCTCCTGAATTCCGAGATCTGATCGGATC
AACAGGCCTGGCTACAGTCTGTCTGCCTTTCTGCCTTTCTGCCTTTCTTT
CTGCCTTTCTTTCTGCCTTTCTTTCTGCCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCCTTGCTT
TCCTTTCTTTCTTTCTCCCCTTCCTTCCTTTCTTTCCTTTCTTCCTTTTC
CTTCTTCCTTCCTCCGGCCCCCTTTTCCTCCTTTCTTTTCCCTCCCTTCC
TTTCATTCCTTTTCCTTAATTCTTTCCAAAGTTTTCAGGGGTAAATTTTA
AATCCCTAAAATGGCCTCTTAAAAATTTTTTCTTGTTTTTTCCCCCTTAA
CTTAAAAAGTTTTCTGGATATCCTATATCCCCTCCCCCTGTTAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTAGGAGCACAGCTCATTGAGCAGTAGGACGCTTGCCCACTGAA
GGCGGGAGCCTAAGTCTATTCTCAAGAACTGTAATCAAAAATGTTCCAAT
CCGACTCTCGACTTCCTGAGGGGGATGTCGATCGACTTCTCCTTCGGTTC
CCCTGTCTGTAAAACGAAGACAAACAGTTTCTACCTCCGAGACATGAGAG
TAAACGAAGGCAGCTTGCTTAGAACAGAGCCCAGGGCGTGGTGCGGACTT
TTTCTGTTATTGCTGTTGCTGAGAAAGAGGAAAGATAAAAGGCAGGGTGA
CTGTTGACAGGAAACTGGGCTTCCCGGGAGAGCGTTCATCTGTGCAGTGC
TCTGAGGCCACGGTGCCTTTGTGGTGGACTGCTTCTTCACTGGGGCCATT
CCCAGCAGCTGGCACCTCCTCGGAGTCACCTCCCTGCCTTCAGCACCTGC
GCATCTAACCCTCACATCACCTTTAGATGCTGTTTTTCTCCGTCAAGGCT
TTGAGTAGTCCGTCTAACACGGTTAGACACTCAATGTGGATTTGAAGCGC
TGCATACCTTTAGCAGATTGAGGGCCACAGGCACAGGTGCGAAGGGTGTT
ATTTCAGATGATGAACATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_i10.b1 MSMg01no500_i10.b1 CHROMAT_FILE:
MSMg01no500_i10.b1 PHD_FILE: MSMg01no500_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:10 2005
         (169 letters)



>mm_chr10_95816950_95817518
          Length = 569

 Score =  273 bits (141), Expect = 5e-78
 Identities = 162/169 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactcacagagttctgcctcctgggtgttggtattaaagaaatgtgctaccaccaccct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 432 aaactcacagagttctgcctcctgggtgttgggattaaagaaatgtgctaccaccgccct 373

                                                                       
Query: 61  gctaggattaaaaatcttaaacacattccaaaagccctccctggtacaccccattgacca 120
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 372 gctaggattaaaaatcttaaacccattccaaaagccctccctggcacaccccagtgacca 313

                                                            
Query: 121 gtgtcctaaagccctgaatattgtcaaggcacaggcttttttgtaattc 169
           | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 312 gggtcctaaagccctgaacattgtcaaggcacaggcttttttgtaattc 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no500_i10.g1 MSMg01no500_i10.g1 CHROMAT_FILE:
MSMg01no500_i10.g1 PHD_FILE: MSMg01no500_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:11 2005
         (555 letters)



>mm_chr10_95663593_95664547
          Length = 955

 Score = 1004 bits (519), Expect = 0.0
 Identities = 546/555 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggagcacagctcattgagcagtaggacgcttgcccactgaaggcgggagcctaagtct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 taggagcacagctcattgagcagtaggacgcttgcccactgaaggcaggagcctaagtct 260

                                                                       
Query: 61  attctcaagaactgtaatcaaaaatgttccaatccgactctcgacttcctgagggggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctcaagaactgtaatcaaaaatgttccaatccgactctcgacttcctgagggggatg 320

                                                                       
Query: 121 tcgatcgacttctccttcggttcccctgtctgtaaaacgaagacaaacagtttctacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgatcgacttctccttcggttcccctgtctgtaaaacgaagacaaacagtttctacctc 380

                                                                       
Query: 181 cgagacatgagagtaaacgaaggcagcttgcttagaacagagcccagggcgtggtgcgga 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagaaatgagagtaaacgaaggcagcttgcttagaacagagcccagggcgtggtgcgga 440

                                                                       
Query: 241 ctttttctgttattgctgttgctgagaaagaggaaagataaaaggcagggtgactgttga 300
           | |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtcggctgttattgctgttgctgagaaagaggaaagataaaaggcagggtgactgttga 500

                                                                       
Query: 301 caggaaactgggcttcccgggagagcgttcatctgtgcagtgctctgaggccacggtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggaaactgggcttcccgggagagcgttcatctgtgcagtgctctgaggccacggtgcc 560

                                                                       
Query: 361 tttgtggtggactgcttcttcactggggccattcccagcagctggcacctcctcggagtc 420
           ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 561 tttgtggtggattgcttcttcactggggccattcccagcagctgccacctcttcggagtc 620

                                                                       
Query: 421 acctccctgccttcagcacctgcgcatctaaccctcacatcacctttagatgctgttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctccctgccttcagcacctgcgcatctaaccctcacatcacctttagatgctgttttt 680

                                                                       
Query: 481 ctccgtcaaggctttgagtagtccgtctaacacggttagacactcaatgtggatttgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctccgtcaaggctttgagtagtccgtctaacacggttagacactcaatgtggatttgaag 740

                          
Query: 541 cgctgcataccttta 555
           |||||||||||||||
Sbjct: 741 cgctgcataccttta 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)