BAC Information

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BAC

Clone NameMSMg01-500M07
Chromosome10 (Build37)
Map Location 78,644,109 - 78,644,409
singlet/doubletsinglet
Overlap geneEG624765
Upstream genePwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik
Downstream geneAJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500M07.T7 (MSMg01no500_m07.b1)MSMg01-500M07.TJ (MSMg01no500_m07.g1)
ACCAG576528AG576529
length648754
length of high quality
(start - end)
301 (300 - 600)190 (61 - 250)
definitionCHROMAT_FILE: MSMg01no500_m07.b1 PHD_FILE: MSMg01no500_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:28 2005CHROMAT_FILE: MSMg01no500_m07.g1 PHD_FILE: MSMg01no500_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GACTCACTAAGTCCCGAGCTCGGCGGAATTCATTCCAATACGAAATAACT
TCTTTGGNCAGAGTGAGAGAGGATGAGTCTAATCCTATTGAATCTTGGTG
TGCCAGGGTGACAGGATATACTCTGGTTGCACACCCTTCCAGCAGAAAAA
GGAAGGGGAGACTCTTTGGGGGTGAACCAGGAGGGGTGGCATTTGATATA
TAAATGGAATAAAATATTAATTTATGGAAAAAATCACTAACATCACAAAT
GGCCTATAAAACATTTGGGTGGTGGCAGGTGGTCCTATTTNGTTTTTATA
ATCTAAGGTGAGAAAGCTACAATTAGCATGACAGTATAGAGAAATAGTAC
ATGTTCTCCATTTCCACTACTTTCTCAAATTTTCTGCTTCAACTCCAGTC
CTTATTTCAACTGATGATAAGCCTTTTTGTCCACAATATTCTATGGTCCT
GCTATTTTATCACAATAGAAACCCTAAGACACTTACCTTAGACAGTCACT
GTCAGTTTTCAGATGGCCTTTGATTTCAAGCCTTTGACAAATAAAGAACA
AAGTGAGTATTTCCCATTTATACTTAACTGTATTGTTGGAAACATGTAGG
CAACAAAATTAATATGAGGATAGAAAAATTTTATTTGTAACATCACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCA
GAAATTCATAGGTGGAACAACAATATGAACTAACCAGTACCTCCCGGAGC
TCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCTTAGTTGGCCATCAG
TGGAAAGAGAGGACTATTGGTCGTGCAAACTTTATATGCCTCAGCCCAGG
GGAACACCAGGGCCAAGAAATGGGAGTGTTTGTGTAGGGGAGTGGGGGGG
ACTTTCTTTTTCTTCCCCTTTTTTTTTCTCTCCCCNCCCCCCTTTTTCTC
GCTTTTCCNCCGNCCCCCCCCCCCGAGCCTTACCCCCCTTTTTTTTTCTC
CCCTTTTTAGACTGTCTGTTGTTCTTTTTTTATTTTTTTCTTTTTTTTTC
CCTTTTTTTGTTTCCCCCCCCCCTTTTTTATTTCGTCCTTATCTTCCACT
TCGCTCTTTGTATTTTCTCCTTTTCGTTCCCCGATTACTCTTGTTTTTTG
GCATATGCTATTCTTCCCTATTTTGCCCTTTTTTCTTTTTTTTTCCCCCT
TTTTCCCCCTCTCTCTTTTCTCCTCCTCTCCCCTCCTCTTCCTCTTCTTC
GTTTCCCTCTTCTTTCTTTTTTTTTTTCCTTTGTTTTTTTTTTACCCTAT
TTTCCTCTCTTACCTATCTGTCTATTTTTGCATTGTTTCCCTTTCCTTTT
TATTTTGCTTCTCTCTTCACTTTCTATCTATTTTTACTTTTTGTCCCCCT
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_m07.b1 MSMg01no500_m07.b1 CHROMAT_FILE:
MSMg01no500_m07.b1 PHD_FILE: MSMg01no500_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:28 2005
         (301 letters)



>mm_chr10_78643909_78644609
          Length = 701

 Score =  559 bits (289), Expect = e-164
 Identities = 298/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctaaggtgagaaagctacaattagcatgacagtatagagaaatagtacatgttctcc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aatctaaggtgagaaagctacaattagcatgacagtaaagagaaatagtacatgttctcc 260

                                                                       
Query: 61  atttccactactttctcaaattttctgcttcaactccagtccttatttcaactgatgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 atttccactactttctcaaattttctgcttcaactccagtccttatttcaactgacgata 320

                                                                       
Query: 121 agcctttttgtccacaatattctatggtcctgctattttatcacaatagaaaccctaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctttttgtccacaatattctatggtcctgctattttatcacaatagaaaccctaaga 380

                                                                       
Query: 181 cacttaccttagacagtcactgtcagttttcagatggcctttgatttcaagcctttgaca 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttagcttagacagtcactgtcagttttcagatggcctttgatttcaagcctttgaca 440

                                                                       
Query: 241 aataaagaacaaagtgagtatttcccatttatacttaactgtattgttggaaacatgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaagaacaaagtgagtatttcccatttatacttaactgtattgttggaaacatgtag 500

            
Query: 301 g 301
           |
Sbjct: 501 g 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)