Query= MSMg01no501_a21.b1 MSMg01no501_a21.b1 CHROMAT_FILE:
MSMg01no501_a21.b1 PHD_FILE: MSMg01no501_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:49 2005
(618 letters)
>mm_chr10_14847423_14848446
Length = 1024
Score = 977 bits (505), Expect = 0.0
Identities = 548/571 (95%), Gaps = 19/571 (3%)
Strand = Plus / Plus
Query: 8 gaattcctcctttttca---acatttaggttgtatgtcaagttaacataagaccagctat 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctcctttt--agatacatttaggttgtatgtcaagttaacataagaccagctat 265
Query: 65 cagagataatcagcatggggaaggcttgacatgatatatggaaacagtaccttctgcttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagagataatcagcatggggaaggcttgacatgatatatggaaacagtaccttctgcttg 325
Query: 125 ctatctttttcactcaggacaaaataggtgtggttttacaaagctaccaaacattttcta 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 ctatctttttcactcaggacaaaataggtgtggttttacaaagctacccaacattttcta 385
Query: 185 aagctgaaatatttaatcagattaaaaggaaaattaaactttattatagctttttttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagctgaaatatttaatcagattaaaaggaaaattaaactttattatagctttttttttt 445
Query: 245 ttt--aggtagagatgttcagttgtttcattttacaccagtctcagtatgtagcccttga 302
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 446 tttttaggtagagatgttcagttgtttcattttacaccagtctcagtatgtagtccttga 505
Query: 303 actgaatcttaatcct---gcctcaaatagctggttgctggactgaagaggaatcacact 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actgaatcttaatcctcctgcctcaaatagctggttgctggactgaagaggaatcacact 565
Query: 360 gctacagttcttatgatccttataaggtcagaaacaaacattataatagttta-tt---- 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 gctacagttcttatgatccttataaggtcagaaacaaacattataatagtttacttgagt 625
Query: 415 ----tgagtgtaagagcaatgaataaatatgtatttacaataaatatgtgaagaaaatat 470
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 626 gtattgagtgtaagagcaatgaataaatatgtatttacaataaatatgtgaagaaagtat 685
Query: 471 aatgaaaaccaaaaggtgatttttcttatttctgtttcagttgctgtgataaaattctcc 530
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 686 aatgaaaaccaaaaggtgatttttcttatttctgttccagttgctgtgataaaattctcc 745
Query: 531 aaacaaaagcaacttaaaaagacagcatctt 561
|||||||||||||||||||||||||||||||
Sbjct: 746 aaacaaaagcaacttaaaaagacagcatctt 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1024
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1014
Effective search space: 616512
Effective search space used: 616512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_a21.g1 MSMg01no501_a21.g1 CHROMAT_FILE:
MSMg01no501_a21.g1 PHD_FILE: MSMg01no501_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:49 2005
(564 letters)
>mm_chr10_15020949_15021912
Length = 964
Score = 959 bits (496), Expect = 0.0
Identities = 509/516 (98%), Gaps = 5/516 (0%)
Strand = Plus / Minus
Query: 1 agtcatataacatattgaatatagatttaatgtgactgtctgtgattctggagacaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agtcatataacatattgaatatagatttaatgtgactgtctgtgattctggagacaaatc 457
Query: 61 tatgaacacagaacagcacacagattcaggcatcatctcacatgcagtacagatagcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tatgaacacagaacagcacacagattcaggcatcatctcacatgcagtacagatagcagc 397
Query: 121 gtgtacaggcatgaggtactgacaaataggcagaagaaatttgggggtagcaccgacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgtacaggcatgaggtactgacaaataggcagaagaaatttgggggtagcaccgacact 337
Query: 181 aacaactgggcaatggtggggaattatcttagaatcatatctgaaaacccagaaattatc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacaactgggcaatgctggggaattatcttagaatcatatctgaaaacccagaaattatc 277
Query: 241 tggggaatctcagtttgtcagagacacagctttgtgctcacctcatcttctcattgacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tggggaatctcagtttgtcagagacacagctttgtgctcacctcatcttctcattgacca 217
Query: 301 ttatacagtgtgtgccttttctttacttttttctttt-----tttcttttttttttaatt 355
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 216 ttatacagtgtgtgccttttctttacttttttcttttcttttttttttttttttttaatt 157
Query: 356 atgtcaccaactgcccttcctctgtctttgagtttggaactacctgtgacacaatctgta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 atgtcaccaactgcccttcctctgtctttgagtttggaactacctgtgacacaatctgta 97
Query: 416 atctaaaggaacaacactgcattcagctagatactctcaaactatagagaatctagaatc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atctaaaggaacaacactgcattcagctagatactctcaaactatagagaatctagaatc 37
Query: 476 aggaaacatttctacctagcgtatgtctaacttaaa 511
||||||||||||||||||||||||||||||||||||
Sbjct: 36 aggaaacatttctacctagcgtatgtctaacttaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
