BAC Information

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BAC

Clone NameMSMg01-501D23
Chromosome10 (Build37)
Map Location 57,805,926 - 57,806,438
singlet/doubletsinglet
Overlap geneLims1
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2
Downstream geneRanbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892, P4ha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501D23.T7 (MSMg01no501_d23.b1)MSMg01-501D23.TJ (MSMg01no501_d23.g1)
ACCAG576891AG576892
length734733
length of high quality
(start - end)
613 (36 - 648)513 (59 - 571)
definitionCHROMAT_FILE: MSMg01no501_d23.b1 PHD_FILE: MSMg01no501_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:03 2005CHROMAT_FILE: MSMg01no501_d23.g1 PHD_FILE: MSMg01no501_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TGATTACGAGTGAAGGGCTGAGAAGCACCTGAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAATTCAAAACCACCCTGAGATTCCACCTCACAC
CAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATTCTGGAGA
GGATGGGGAGAAAGAGGAACACTCCTCCATTGCTGATGGGATTGCAAGCT
TGTAAAACCACTCTGGAAACCAGTCTGGCAGTTCCTCAGAAAATTGGACA
TAGTACTACCGGAAGATCTATCAATACCTCTCCAGGGCATATATCCAGCA
GATATTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAACCTGGAAAGAACCCAGATCTCCCTCAACAG
AGGAATGAATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAACAATGAATTTATGAAATTCTTGGGCAAATGGATGTATCT
GGAGGATATCATCCTGAGTGAGGTAACCCAATCACAGAAGAAGACTCTTG
ATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTATTATACCCA
AGATGCAATTTGCAAAACACAAGAAAATCAAGAAGAAGAAGACCAACTTG
TGGATGCTTCATTCCCTCTTAGAATAAGGAACAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTTTCTGAAGGAGCACTGAAGTTTCAGGGGCTTTCCTGCAA
TCATGGGTGGAAAATTTCCACACTTAGAAGTTCTTTGTTTTCCCATGGAG
TTCCTTTAAGGGCAGAGACTTGCTCTGACTCTTCTTGAGTTTTTCTCTCT
CATGTTCTCTCACTGTCTCTTTCTCTCTGTCTATCTGCATCCACCCTCAA
CCCCTCCACCAAATGGTCTTTTACTTTCCACCCCAATAACTCTCTTGCAT
GAGCTCTGCTGTGTGGTGGATCTCTGCTGCTTGCCCTGGCCCTAAGTACC
CCCTCCCTCTTGTACTTCCAGAGCTAAATCCTAGATTGACTTGAAGAATC
CAGAGCAAAGACAGAAAGTGGCAGATTGAACATGACCAGCAGAATAGACT
GGGCCATGAGAGGGGAGAGATCGGGGAAGAGCACGAGAGGAAGAGGAGAT
GGGACCAAAAGAGACCCAAGAAAGCACGCGGCTGAAATGGCAGGTTTTTA
AAGAATCTGAAACTGGAGGAACAAAGCCCCTGAGCTAGAGAGGTTTTAGG
GTAGGGGAAGGGAGTGCGGAAAANCAAAGAGGAGCCACAGGTACAAAGTG
AGCTCGGAGGCCAGTGCACACTTCGTTATGCTAATAGGCACCTTAGGTTA
GCCTTTATCCCTGAGTTTCTTTTGGGACTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_d23.g1 MSMg01no501_d23.g1 CHROMAT_FILE:
MSMg01no501_d23.g1 PHD_FILE: MSMg01no501_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:03 2005
         (513 letters)



>mm_chr10_57805548_57806460
          Length = 913

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttctgaaggagcactgaagtttcaggggctttcctgcaatcatgggtggaaaatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tctttctgaaggagcactgaagtttcaggggctttcctgcaatcatgggtggaaaatttc 832

                                                                       
Query: 61  cacacttagaagttctttgttttcccatggagttcctttaagggcagagacttgctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 cacacttagaagttctttgttttcccatggagttcctttaagggcagagacttgctctga 772

                                                                       
Query: 121 ctcttcttgagtttttctctctcatgttctctcactgtctctttctctctgtctatctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ctcttcttgagtttttctctctcatgttctctcactgtctctttctctctgtctatctgc 712

                                                                       
Query: 181 atccaccctcaacccctccaccaaatggtcttttactttccaccccaataactctcttgc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 711 atccaccctcaacccctccaccagatggtcttttactttccaccccaataaatctcttgc 652

                                                                       
Query: 241 atgagctctgctgtgtggtggatctctgctgcttgccctggccctaagtaccccctccct 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atgagttctgctgtgtggtggatctctgctgcttgccctggccctaagtaccccctccct 592

                                                                       
Query: 301 cttgtacttccagagctaaatcctagattgacttgaagaatccagagcaaagacagaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cttgtacttccagagctaaatcctagattgacttgaagaatccagagcaaagacagaaag 532

                                                                       
Query: 361 tggcagattgaacatgaccagcagaatagactgggccatgagaggggagagatcggggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tggcagattgaacatgaccagcagaatagactgggccatgagaggggagagatcggggaa 472

                                                                       
Query: 421 gagcacgagaggaagaggagatgggaccaaaagagacccaagaaagcacgcggctgaaat 480
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 gagcacgagaggaagaagagatgggaccaaaagagacccaagaaagcacacggctgaaat 412

                                            
Query: 481 ggcaggtttttaaagaatctgaaactggaggaa 513
           |||||||||||||||||||||||||||||||||
Sbjct: 411 ggcaggtttttaaagaatctgaaactggaggaa 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)