BAC Information

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BAC

Clone NameMSMg01-501L01
Chromosome10 (Build37)
Map Location 85,737,485 - 85,737,905
singlet/doubletsinglet
Overlap geneSyn3
Upstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneTimp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501L01.T7 (MSMg01no501_l01.b1)MSMg01-501L01.TJ (MSMg01no501_l01.g1)
ACCAG577225AG577226
length734695
length of high quality
(start - end)		440 (37 - 476)578 (60 - 637)
definitionCHROMAT_FILE: MSMg01no501_l01.b1 PHD_FILE: MSMg01no501_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:33 2005CHROMAT_FILE: MSMg01no501_l01.g1 PHD_FILE: MSMg01no501_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCG
GGATTCCAAAATTCCTGGGCTACCCACTGTTCTTTTACTCTCCTTTTCCC
CCTCCCCTCCTTCCTTCCTGACTCCTTTCTTCTCTCCTCCCCGCTCCTTC
CCTCGCCTTTCTGTTCTTTCCTTTTACTTTTCTTCAAGATTGTTTTTCCT
TTACACAGGGTCTACCTATACCACCCAAGTGCCCTATCTTCCCACAGGAG
CCTCCTTGGGTAGGTTTATTAGCCTTTGTGGTGGTTTGAATGAAAATGGC
CCCCATAGACCCATGGGGATAGCATTATTAGTAAGTGTGGCCTTGTTGGA
TTGGTGTGGCCTTGTAGAAGGAATTGGTTCATTGAGGGGTGGGCTTTGGG
GTTTCAGAAGCTCAAGCCAGGCACAGCCAGTCTCAGTCTCTCCCACTCCC
TCTCCCCCTCCCCTCCCCTCCCCCACCTCCNNNNNNNNNNNNNNNCNCNN
NNNTTCNNTTCTTTCTTTTTCCCNTCTCTTTTTCTTCCTTTCTTCTCCTC
TCCCTTCTTTTTTTCTTTCTTTTTCTTTCTTCTTCTTTTTCCTTCCCTTC
TTTTTTTTCTTCTCCNCTTTCTTCTNCTTCTTTCCTTCTCTTCTTTTTTT
TTTTTTTTTCTTCTCCTCTTTCTCCTCTTTCCTTTTTTTCTTTCCCTCTC
CCTTCTCTTTTCTCCCTTCTCTCTCTCTCTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGCACCTTTGGGAACTTTATGAGATATCCTTGCCTACAGAC
AGTCATGGGTGTGAATTTCCAAGAAGAAAATAGATATCAGAATTTTGGCT
TTTCCTTTACATTGGGAATCTGAATCTACTTCATCAAGCACTAGTTTCCT
CATCACAGGAACGCTGGGAACACCATCAGACTTACTCAGCAGGCCATTGT
GGAGTGCCTGCCATGTACCAGGTACAAGTTTGAGTGCTATGGACATCTTG
GTAAACACATCTAAGATGATTATTCATGATTATCAATGAACTTATTGAGA
GTTACCTAGGAGATTGGTGAAGCCCACCTCTAGCTGTACATAGTGGGGCC
TTTCCAGAGAGGATTAGTCCGCACCATCCCATTGGCTGTGGGCTTGAGTA
GAGGAACAAGAAGGAGCCCCCTTTGGTTCGGACACTCTTACTTCCTGGCC
ACCTGATGTGAGATGCTCTGTTCTGTCAGGCTGTCTATCGTGATGTACTG
AACCCATTGAAATAGGGAAAGAAAATGAATATTTTTCCCTTCTAAGTTGT
TTTTCTTGGGTATTTTGCGATAACAATGAAGAAAACACCATANAACCTCC
CATGTTTCTTTTCTGGAAGTTTCCACTGTGGGTGGCAGTTAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_l01.g1 MSMg01no501_l01.g1 CHROMAT_FILE:
MSMg01no501_l01.g1 PHD_FILE: MSMg01no501_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:33 2005
         (578 letters)



>mm_chr10_85736928_85737905
          Length = 978

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%), Gaps = 2/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 158 ggaacaccatcagacttactcagcaggccattgtggagtgcctgccatgtaccaggtaca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ggaacaccatcagacttactcagcaggccattgtggagtgcctgccatgtaccaggtaca 919

                                                                       
Query: 218 agtttgagtgctatggacatcttggtaaacacatctaagatgattattcatgattatcaa 277
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 918 agtttgagtgctatggacatcttggtaaacacaactaagatgattattcatgattatcaa 859

                                                                       
Query: 278 tgaacttattgagagttacctaggagattggtgaagcccacctctagctgtacatagtg- 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | 
Sbjct: 858 tgaacttattgagagttacctaggagattggtgaagcccacctctagctgtacttag-ga 800

                                                                       
Query: 337 gggcctttccagagaggattagtccgcaccatcccattggctgtgggcttgagtagagga 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gggcctttccagagaggattagtccgcaccatcccattggctgtgggcttgagtagagga 740

                                                                       
Query: 397 acaagaaggagccccctttggttcggacactcttacttcctggccacctgatgtgagatg 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acaagaaggagccccctttggttcggacactcttacttcctggccacctgatgtgagatg 680

                                                                       
Query: 457 ctctgttctgtcaggctgtctatcgtgatgtactgaacccattgaaatagggaaagaaaa 516
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctctgttctgtcaggctgtctattgtgatgtactgaacccattgaaatagggaaagaaaa 620

                                                                       
Query: 517 tgaatatttttcccttctaagttgtttttcttgggtattttgcgataacaatgaagaaaa 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgaatatttttcccttctaagttgtttttcttgggtattttgcgataacaatgaagaaaa 560

             
Query: 577 ca 578
           ||
Sbjct: 559 ca 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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