BAC Information

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BAC

Clone NameMSMg01-501L13
Chromosome10 (Build37)
Map Location 24,018,536 - 24,019,025
singlet/doubletsinglet
Overlap geneMoxd1
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
Downstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501L13.T7 (MSMg01no501_l13.b1)MSMg01-501L13.TJ (MSMg01no501_l13.g1)
ACCAG577248AG577249
length669692
length of high quality
(start - end)		619 (49 - 667)563 (58 - 620)
definitionCHROMAT_FILE: MSMg01no501_l13.b1 PHD_FILE: MSMg01no501_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:36 2005CHROMAT_FILE: MSMg01no501_l13.g1 PHD_FILE: MSMg01no501_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTTCAGAAGATCCGCGGAATTCCACTGAACTCCCCAACAT
AAGAGGTAATGTCTAAACAGGATGTTGTTCTAATGATATAATTAAGAACA
GTCTACGTTCTTGAAAGTTACTGTACCGGGTACAAAGTGTAGAATACCCA
GTGGGGATGGATGCCTCAGCAGCAGATCTCCTGCTTTGGCTGCTTGAGAA
AACCAGTACAAAAGAGTTAGTTCTGAATCAGCGTTAAAAGCATGGAAGCT
ATCTGTAGTGGCCTCTGCCTGTAACCCCAGCATCCAGACAGAAGGTGGAT
TTATATTTCAAGTCTAACCTTCACTACACAGAGAGTTCAAGACCAGCCTT
GGGCCACATGTGACCCTGTGTCAAAAATATATACATATACTGAGAAAATT
ATACTTCACACACAATATACTCTGCTTCCACAGACACCCTAAAAACAGGC
ACATTGGTTTTAAATGGCAGAGAATGAAAAGGTAACACAAGAGGGTTTTA
GCCTCCTTGAAAGGCTATTCAGGAGACTGCTTCCTGTCAATGTTGTATAC
TATTGGCTTCTGGATAAAGAAAAGCATAAGTTATGCAGCCAAAACTTTCC
CTTAACTAACCTACAGCTGTTACATGAGCTTGCCATGAGTGACCACTAGG
TGTCAGACTTGTGATAGCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGATCTAAGAGCATAAGCTCTGTTCTGTTTAGGGAATTTTCC
CCTGTGTCCATGTGCTCAAGGTTCCTTCCCACTTTCTCTTCTATTAGATT
TAGTGTCTCTGGTTTTATGTGGAGGTCCTTGATGCACTTGGACTTTGCAC
AAGTTGATAAGAATGCATCAATTTGCATTTTTCTACATGCTGACTGCCAG
GTGAACCAGCACCCTTTGTTGAATATGCTGTCTTTTTTCTACTGGAGGGT
TTTAGCTTCTTTGTCAAAGATCAAGTGACCATAGATAGGTGTGTGGGTTC
ATTTCTGGCTCTTCAATTATATTCCATTGATCTACCTGTCTATCTCTGTA
CCAATACCATGCAGTTTTTATCATGATTGCTCTGTAGTACAGCTTGAGGT
CAGGCATGGTGATTCTCCCAGATGTTCCTTTATTGTGGAGAATAGTTTTT
GATATCCTGGGTTTCTTGTTATTCCAAATGAATTTGAGAATTTCTCTTCT
TACTCTATGAAGAATTGAGTTGGAATTTTGATGGGGATTGTGTTGTATCT
GTAGATTGCTTTTGACAAGATGGCCATTATTACTATATATACCTACATAT
ATATCATATATATATATATATATATACACACACACATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_l13.b1 MSMg01no501_l13.b1 CHROMAT_FILE:
MSMg01no501_l13.b1 PHD_FILE: MSMg01no501_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:36 2005
         (619 letters)



>mm_chr10_24018007_24019025
          Length = 1019

 Score =  893 bits (462), Expect = 0.0
 Identities = 483/490 (98%)
 Strand = Plus / Minus

                                                                        
Query: 130  ctcctgctttggctgcttgagaaaaccagtacaaaagagttagttctgaatcagcgttaa 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1019 ctcctgctttggctgcttgagaaaaccagtacaaaagagttagttctgaatcagcattaa 960

                                                                        
Query: 190  aagcatggaagctatctgtagtggcctctgcctgtaaccccagcatccagacagaaggtg 249
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  aagcatggaagctatctgtggtggcctctgcctgtaaccccagcatccagacagaaggtg 900

                                                                        
Query: 250  gatttatatttcaagtctaaccttcactacacagagagttcaagaccagccttgggccac 309
            |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  gataaatagttcaagtctaaccttcactacacagagagttcaagaccagccttgggccac 840

                                                                        
Query: 310  atgtgaccctgtgtcaaaaatatatacatatactgagaaaattatacttcacacacaata 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  atgtgaccctgtgtcaaaaatatatacatatactgagaaaattatacttcacacacaata 780

                                                                        
Query: 370  tactctgcttccacagacaccctaaaaacaggcacattggttttaaatggcagagaatga 429
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 779  tactctgcttccacagacaccctaaaaacaggcacattggttttaaatggcaaagaatga 720

                                                                        
Query: 430  aaaggtaacacaagagggttttagcctccttgaaaggctattcaggagactgcttcctgt 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  aaaggtaacacaagagggttttagcctccttgaaaggctattcaggagactgcttcctgt 660

                                                                        
Query: 490  caatgttgtatactattggcttctggataaagaaaagcataagttatgcagccaaaactt 549
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  caatattgtatactattggcttctggataaagaaaagcataagttatgcagccaaaactt 600

                                                                        
Query: 550  tcccttaactaacctacagctgttacatgagcttgccatgagtgaccactaggtgtcaga 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599  tcccttaactaacctacagctgttacatgagcttgccatgagtgaccactaggtgtcaga 540

                      
Query: 610  cttgtgatag 619
            ||||||||||
Sbjct: 539  cttgtgatag 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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