Query= MSMg01no501_n02.b1 MSMg01no501_n02.b1 CHROMAT_FILE:
MSMg01no501_n02.b1 PHD_FILE: MSMg01no501_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:42 2005
(546 letters)
>mm_chr10_61145805_61146746
Length = 942
Score = 1036 bits (536), Expect = 0.0
Identities = 542/546 (99%), Gaps = 4/546 (0%)
Strand = Plus / Plus
Query: 1 tagcattcaggatgctgaagcataaggatagcttaaagccctggagtttgaagccagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcattcaggatgctgaagcataaggatagcttaaagccctggagtttgaagccagtct 260
Query: 61 aggcaacacagcaggatcctgtctcttaaaagataaaaatacacacatatgtatgaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaacacagcaggatcctgtctcttaaaagataaaaatacacacatatgtatgaatgt 320
Query: 121 gcatacataggtaatttcctccagttattgttcatggaaggaagttttgtgtaattgcag 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gcatacataggtaatttcctccagttattgttcatggaag----ttttgtgtaattgcag 376
Query: 181 ttactgcattttctgtcaagttttgtcttgttgagaaagtagtggtttttcttttctgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttactgcattttctgtcaagttttgtcttgttgagaaagtagtggtttttcttttctgcg 436
Query: 241 ataaacggagctgctgatacagaaattcagtgtgaccaggaaatgggtctctgtgaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ataaacggagctgctgatacagaaattcagtgtgaccaggaaatgggtctctgtgaatct 496
Query: 301 taccattcctcggtatttctagatccttccttcttaactgtgcttagagctctcagtggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taccattcctcggtatttctagatccttccttcttaactgtgcttagagctctcagtggc 556
Query: 361 tttactcatacattttccccttaaagcctataggcactaggaaaagtggttttggtgtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttactcatacattttccccttaaagcctataggcactaggaaaagtggttttggtgtct 616
Query: 421 gtgctagttaagacagactggcagcagtccttggtgcttcatggttgagaccctgtctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtgctagttaagacagactggcagcagtccttggtgcttcatggttgagaccctgtctca 676
Query: 481 aaagaaacaaataagatgtttgcttgctttagaacctcttactatattatgaattagtat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaagaaacaaataagatgtttgcttgctttagaacctcttactatattatgaattagtat 736
Query: 541 acttaa 546
||||||
Sbjct: 737 acttaa 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 942
Length adjustment: 10
Effective length of query: 536
Effective length of database: 932
Effective search space: 499552
Effective search space used: 499552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_n02.g1 MSMg01no501_n02.g1 CHROMAT_FILE:
MSMg01no501_n02.g1 PHD_FILE: MSMg01no501_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:43 2005
(586 letters)
>mm_chr10_61274399_61275382
Length = 984
Score = 951 bits (492), Expect = 0.0
Identities = 523/534 (97%), Gaps = 2/534 (0%)
Strand = Plus / Minus
Query: 53 ttacataaagcagggggcagagaacacttgtccctagacaccggacatccagcttcaaag 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 984 ttacataaagcagggggcagagaacacttgtccctagacaccggacatccagcttctaag 925
Query: 113 agcagtgaccactgagagaggtaatcctggaggtggactctggaatgcacccagcttaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 agcagtgaccactgagagaggtaatcctggaggtggactctggaatgcacccagcttaac 865
Query: 173 ctgtagagaatttcccaaccagactgagaggctggtcagagaaggggggccctgacagtc 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 864 ctgtagagaatttcccaaccagactgagaggctggtcagagaaggggggccctgacggtc 805
Query: 233 tccccgagttgaggatatttactcgggatcaggcaacttgtgttcgtgacgggtgcacag 292
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tccccgagttgaggagacaaactcgggatcaggcaacttgtgttcgtgacgggtgcacag 745
Query: 293 agaaggcacctccgagacactcactcatcagtgcaggtatggatggaaattgccagaaaa 352
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agaaggcacctctgagacactcactcatcagtgcaggtatggatggaaattgccagaaaa 685
Query: 353 ctgggaatgaaccacccccagggggcaaggcgaacatttctaagagcccacacagaacca 412
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 cagggaatgaaccacccccagggggcaaggcgaacatttccaagagcccacacagaacca 625
Query: 413 ggaaagcctgtggcctcaggcgccacaggaagagagctaccagggggaggaggattctgg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaaagcctgtggcctcaggcgccacaggaagagagctaccagggggaggaggattctgg 565
Query: 473 gattcaagttatgaggccaaatcggctctagagccaaaactgctcagcccctacccagca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gattcaagttatgaggccaaatcggctctagagccaaaactgctcagcccctacccagca 505
Query: 533 atgcttaaaccacaggcctcaagatgccacagcagtttccaatcaacttgcatt 586
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 atgcttaaaccacaggcctc--gatgccacagcagtttccaatcaacttgcatt 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 984
Length adjustment: 10
Effective length of query: 576
Effective length of database: 974
Effective search space: 561024
Effective search space used: 561024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
