BAC Information

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BAC

Clone NameMSMg01-502D11
Chromosome10 (Build37)
Map Location 91,441,534 - 91,582,489
singlet/doubletdoublet
Overlap geneLOC100041799
Upstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502D11.T7 (MSMg01no502_d11.b1)MSMg01-502D11.TJ (MSMg01no502_d11.g1)
ACCAG577624AG577625
length674699
length of high quality
(start - end)
626 (49 - 674)639 (61 - 699)
definitionCHROMAT_FILE: MSMg01no502_d11.b1 PHD_FILE: MSMg01no502_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:11 2005CHROMAT_FILE: MSMg01no502_d11.g1 PHD_FILE: MSMg01no502_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,582,058 - 91,582,489)(91,441,534 - 91,442,172)
sequence
AACAATTTTCAAAGAGGATCCGCGGAATTCTCTATACCCCAAATCTGGCA
TGTTTTCCATTATATTGGCCAAGACATAATATCTGTTTTACTAATGCCTT
AGTTGACTTCTGTATGAATGTGTGCTATTTAGAAATAACTAATTACAAAA
AAGATTAAAATCAGAGTTAATTAATTTGGGAAGAGGGGTATTTTGGGGGG
AGCTGAAAACTTATAGAGCAAAGGCTCTCAGCCTAAGGGTTGTGACCCCT
TTGAAGGTTGGATGACCTTTTTACAGGGGTTGCCTATTTTCTCTGGAAAA
CACAGGTTCTTACGTTACAATTCATAGGAGTAGCAAAGTTACAGTTATGA
AGTAGCCACACAAAAATTTTATAGGTTAGGGTCACCACAGCGTGAGGAAC
TTTATTAAAGGGTCACAGTGTTAGGAAGGTTGAGAACCACTGTTCTACAG
TGTGACACATACAAATAACTGACTCCATGATGAGTGCCTAGCCTAACCAG
GCCACTCCTTTATGCTTAACACCCTAAAGAAAAACCCCCTACCATTCATG
TATTTTAATGTAATATTAGCTATTGGAACACTTCTTCTAAACCAACAGGA
TGATATTCAGCACACCCCAAACCCTTATTTAGATTCTTAAGGACCAATTT
TCTGAGCAAAGACTATGAGGAACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTGTCTTTGGCACAAGAACGGGTTCAGAGGATAATACTG
GAAATGGAGGGGGAAATAGTAAGGTTGTTGCTAGTGTTATCCAGAGTGAG
TCCTAATGAGAGAATACCAAATTAAAAGACTGCTTTGGCTGTTCATTGGA
AATTCCAGCTCAATGACCACTGTTTTAATAGTGTGACTATAATGAGTAGT
CAGAGTTCTATGTATCTTCTGCTGCATGCCTGTCCTCCTTCCTCCTCTCT
TTTCTTTCCTCTTCCTGCCCCTCTCCTTCCCAGTCATTCTGTCTGTCTCT
CTCTTTCTCTGTCTGTCTCTCTCTGTCTCTTTGTCTCTATCTCTCTCTGT
CTCTCTCTGAAAAGTGTTCATATTTCTGCATCTATTTAAACTGGGTTTTA
ACCAGCTGGAGATTTGTCAGTAAATGGGGTCATAATAAACCCAGCACTCC
AGACGTTCCTGGAGTTGAAGTAGCAATTTCACCGCCATTCTTTCCATCAG
AAGCAATCTCCTGTAAGCCTTTTTGATGAGTTTTGTGAAAACAAAATCCG
TGTGGACTAGAATTTCTCAAACTTAGTTTCAGGTTAAAATTAAAGATAAA
CATTTACTGATAGTTGATGTGGTGGGGGAAAAAGTTTTAAAGAAAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_d11.b1 MSMg01no502_d11.b1 CHROMAT_FILE:
MSMg01no502_d11.b1 PHD_FILE: MSMg01no502_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:11 2005
         (626 letters)



>mm_chr10_91581464_91582489
          Length = 1026

 Score =  781 bits (404), Expect = 0.0
 Identities = 425/432 (98%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgacccctttgaaggttggatgacctttttacaggggttgcctattttctctggaaaaca 254
            ||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||
Sbjct: 1026 tgacccctttgaaggttggatgacctttttacaggggttgcctaagtaccctggaaaaca 967

                                                                        
Query: 255  caggttcttacgttacaattcataggagtagcaaagttacagttatgaagtagccacaca 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  caggttcttacgttacaattcataggagtagcaaagttacagttatgaagtagccacaca 907

                                                                        
Query: 315  aaaattttataggttagggtcaccacagcgtgaggaactttattaaagggtcacagtgtt 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  aaaattttataggttagggtcaccacagcgtgaggaactttattaaagggtcacagtgtt 847

                                                                        
Query: 375  aggaaggttgagaaccactgttctacagtgtgacacatacaaataactgactccatgatg 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  aggaaggttgagaaccactgttctacagtgtgacacatacaaataactgactccatgatg 787

                                                                        
Query: 435  agtgcctagcctaaccaggccactcctttatgcttaacaccctaaagaaaaaccccctac 494
             ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 786  ggtgcctagcctaaccaggccactcctttatgcttaacaccctaaaaaaaaaacccctac 727

                                                                        
Query: 495  cattcatgtattttaatgtaatattagctattggaacacttcttctaaaccaacaggatg 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  cattcatgtattttaatgtaatattagctattggaacacttcttctaaaccaacaggatg 667

                                                                        
Query: 555  atattcagcacaccccaaacccttatttagattcttaaggaccaattttctgagcaaaga 614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  atattcagcacaccccaaacccttatttagattcttaaggaccaattttctgagcaaaga 607

                        
Query: 615  ctatgaggaacc 626
            ||||||||||||
Sbjct: 606  ctatgaggaacc 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_d11.g1 MSMg01no502_d11.g1 CHROMAT_FILE:
MSMg01no502_d11.g1 PHD_FILE: MSMg01no502_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:11 2005
         (639 letters)



>mm_chr10_91441334_91442372
          Length = 1039

 Score = 1212 bits (627), Expect = 0.0
 Identities = 636/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtctttggcacaagaacgggttcagaggataatactggaaatggagggggaaatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtctttggcacaagaacgggttcagaggataatactggaaatggagggggaaatagt 260

                                                                       
Query: 61  aaggttgttgctagtgttatccagagtgagtcctaatgagagaataccaaattaaaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttgttgctagtgttatccagagtgagtcctaatgagagaataccaaattaaaagac 320

                                                                       
Query: 121 tgctttggctgttcattggaaattccagctcaatgaccactgttttaatagtgtgactat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctttggctgttcattgggaattccagctcaatgaccactgttttaatagtgtgactat 380

                                                                       
Query: 181 aatgagtagtcagagttctatgtatcttctgctgcatgcctgtcctccttcctcctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgagtagtcagagttctatgtatcttctgctgcatgcctgtcctccttcctcctctct 440

                                                                       
Query: 241 tttctttcctcttcctgcccctctccttcccagtcattctgtctgtctctctctttctct 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctttcctcttcctgcccctctccttcccagtcattctgtctgtctctctctttctct 500

                                                                       
Query: 301 gtctgtctctctctgtctctttgtctctatctctctctgtctctctctgaaaagtgttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgtctctctctgtctctttgtctctatctctctctgtctctctctgaaaagtgttca 560

                                                                       
Query: 361 tatttctgcatctatttaaactgggttttaaccagctggagatttgtcagtaaatggggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttctgcatctatttaaactgggttttaaccagctggagatttgtcagtaaatggggt 620

                                                                       
Query: 421 cataataaacccagcactccagacgttcctggagttgaagtagcaatttcaccgccattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataataaacccagcactccagacgttcctggagttgaagtagcaatttcaccgccattc 680

                                                                       
Query: 481 tttccatcagaagcaatctcctgtaagcctttttgatgagttttgtgaaaacaaaatccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttccatcagaagcaatctcctgtaagcctttttgatgagttttgtgaaaacaaaatccg 740

                                                                       
Query: 541 tgtggactagaatttctcaaacttagtttcaggttaaaattaaagataaacatttactga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtggactagaatttctcaaacttagtttcaggttaaaattaaagataaacatttactga 800

                                                  
Query: 601 tagttgatgtggtgggggaaaaagttttaaagaaaaatc 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagttgatgtggtgggggaaaaagttttaaagaaaaatc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)