BAC Information

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BAC

Clone NameMSMg01-502K18
Chromosome10 (Build37)
Map Location 101,017,011 - 101,017,425
singlet/doubletsinglet
Overlap genenone
Upstream gene4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c, LOC667652, Nts, Pamci
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K18.T7 (MSMg01no502_k18.b1)MSMg01-502K18.TJ (MSMg01no502_k18.g1)
ACCAG577971AG577972
length756749
length of high quality
(start - end)		423 (20 - 442)544 (60 - 603)
definitionCHROMAT_FILE: MSMg01no502_k18.b1 PHD_FILE: MSMg01no502_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:46 2005CHROMAT_FILE: MSMg01no502_k18.g1 PHD_FILE: MSMg01no502_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTCCGAGAGGATCCGCGGAATTCAGTTGTTACACATTTCTT
GGGGCTGAATTACAGGTGGATGCATACGAGCAGATGCAGTCTCAGCAAAC
AGAACATGGGTCCTCTGAAATAGTGGTTCTGCTTTACCCCTGAGCCGTGA
TCTGATGACTTGATACTTATTTCCTTTACTAACAGCTTTTAATATGTGTC
CATCTATAAATGTCTAAATACATAACTCTTAGTGACCATTCACTTTAAAA
CAACATGTCTGGCCACTGACATGACTCAGTAGGTAAAGCAAGATTTGTCG
AAAAGTTCTGCAATTGAGCTCAACGCTGAGAACCTATACAAAGGTGAATG
GCATTTTTGTAGTTGTCCTCTGTCCTTAAGTGGATCACTTTGCCCCCCAA
CCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGNTNNNNNNN
TNNNNNNNNNTNNNNNNNTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTNTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTT
TTTTTTTCTTTTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNTCTTT
TCTTTTCTTTCTCTTTTTCCCTTTCTCCCCCCTCTCCCTTTCTTTCTTTT
TTCTCCCCCTTTCCCCTTCTTTTCTTCTTCTTTCTTTTCCGTTCTCTTTT
CCTACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCTGCACTGGGGCATCAAGCCTTCACAAAATCAAGGGCCT
CTCCTCCCATTGATGCATGACAAAAGGCATCCTCTGCTACATATGTACAT
ATGCTGCTGGGACATGGGTCCTTCCATGTGTACTCCTTGGTTGGTGGTTT
AGTTCCTAGGAACTCTGGGGGTTGGGGGAAGCAGGATCTGGTTGGTTGTT
TTTGTTGTTCTTCTTATGGGGTTGTAAAGGCCTTCAGATCCTTCAGTCCT
TTCTCTAACTCATCCATTGGGGTCCCTTTGCTCAGTCCAATGGTTGGCTG
TGAGCTTCTGCCTCTGTATTTGTCAGGCTCAGGCAGAGCCTCTCAGTAGA
CAGCCATATCAGGAAGCACTTCTTGGCATCAGCAATAGTTTCTTGTTTTG
CTGTCTGCAGATCTGATGGATCCCTAGGTGGGGCAGGGGATCTCTGGATG
GCCTTTCCTTCAGTTTCTGTTCCACTCTTTGTCCCTGAATTTCCTTTAGA
CAGGATTAATTCTGGGTCAATAATTTTGAGATGGGTGGATGGTCCTGCCT
AACCTGTGGATATTGTCTCTACAGGGTCTCTCTCTTCTCTCTTCAGCTAA
TGTCATTTCCATTGGGTCCTGGGGACTTCTTGATTTCCTGGCATCTATGA
TTTTCTAGTGGGTACCCCCAGGTTCCCAAGTTTCATTGCCATACATCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k18.b1 MSMg01no502_k18.b1 CHROMAT_FILE:
MSMg01no502_k18.b1 PHD_FILE: MSMg01no502_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:46 2005
         (423 letters)



>mm_chr10_101016805_101017629
          Length = 825

 Score =  737 bits (381), Expect = 0.0
 Identities = 406/415 (97%), Gaps = 2/415 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcagttgttacacatttcttggggctgaattacaggtggatgcatacgagcagat 66
           ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcagttgaaacagatttcttggggctgaattacaggtggatgcatacgagcagat 266

                                                                       
Query: 67  gcagtctcagcaaacagaacatgggtcctctgaaatagtggttctgctttacccctgagc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcagtctcagcaaacagaacatgggtcctctgaaatagtggttctgctttacccctgagc 326

                                                                       
Query: 127 cgtgatctgatgacttgatacttatttcctttactaacagcttttaatatgtgtccatct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgtgatctgatgacttgatacttatttcctttactaacagcttttaatatgtgtccatct 386

                                                                       
Query: 187 ataaatgtctaaatacataactcttagtgaccattcactttaaaacaacatgtctg--gc 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 387 ataaatgtctaaatacataactcttagtgagcattcactttaaaacaacatgtctgtggc 446

                                                                       
Query: 245 cactgacatgactcagtaggtaaagcaagatttgtcgaaaagttctgcaattgagctcaa 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 447 cactgacatgactcagtaggtaaagcaagatttgccgaaaagttctgcaattgagctcaa 506

                                                                       
Query: 305 cgctgagaacctatacaaaggtgaatggcatttttgtagttgtcctctgtccttaagtgg 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 507 cgctgagaacctatacaaaggtgaaaggcatttttgtagttgtcctctgtccttaagtgg 566

                                                                  
Query: 365 atcactttgccccccaaccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 419
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atcactttgcccccccaccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 825
Length adjustment: 9
Effective length of query: 414
Effective length of database: 816
Effective search space:   337824
Effective search space used:   337824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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