BAC Information

Click to search

BAC

Clone NameMSMg01-503C09
Chromosome10 (Build37)
Map Location 31,307,397 - 31,307,951
singlet/doubletsinglet
Overlap geneIbrdc1
Upstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, LOC666055
Downstream geneLOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503C09.T7 (MSMg01no503_c09.b1)MSMg01-503C09.TJ (MSMg01no503_c09.g1)
ACCAG578334AG578335
length722721
length of high quality
(start - end)
555 (88 - 642)495 (93 - 587)
definitionCHROMAT_FILE: MSMg01no503_c09.b1 PHD_FILE: MSMg01no503_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:21 2005CHROMAT_FILE: MSMg01no503_c09.g1 PHD_FILE: MSMg01no503_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCTTTTCCTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACTTTATATTTCCAAGAAGGAAACAAAGGTAGA
GGACGATAAACGAAGATCAGGCTAAGTAATGAACATGCCTTAATGAAGCC
CACTGCTTTGTATTCTAATTTTAAAAATCTAACAGCATGATGAATGATTA
CAAACTGGCATGTATACCCCATCAGAGTTCCTGGTGTCTGAATAGAACAA
CCAACTTGAGAAAGGGAGTTTAAATCTAGTTACCTCTGATATCATACACT
ACTGTTATATACTGTGTCACACATCCTATGATTACGACAGAATCTGATGG
GGCTAGAACAAATCTCAAAGGTGGCAGTTCTCCTGCATCTGACTTTACAT
GGATACTTCTGAGTGTGTAAAATAAACATAGAAAGTACCAAAAAACTTGT
CTAAGTCTATTTAGGTTACTATAACAAAATCTATAGTTGTCAATGTATAA
ACAGTGGGCACATCTCTTATGGTTTTAGAGTTGAGGTATACAAAGAGCAA
AGTGCCAGGAGACTGTATCCAGAGAGGTTCTGTTCTTCACAGATGAATCT
TCTCCATGGCCTCAGGGACTGGGCACAAGTTTCATCCATGAGGAATTATA
ACCTTTCAAAGCCATTCCATGAGCTAATTGACTGATTGTTTCACGTGGTG
TGGGAAACAGAAATGTAGCTTA
TTTTTGCGTTTTTTTCCCAAGATAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGA
GGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAA
TCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCA
GTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGG
ATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTG
TACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCATAAAACTGGACATA
GTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGA
TGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCT
TATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAAT
ATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCCAGA
TATAAGATATAATTTGCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_c09.b1 MSMg01no503_c09.b1 CHROMAT_FILE:
MSMg01no503_c09.b1 PHD_FILE: MSMg01no503_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:21 2005
         (555 letters)



>mm_chr10_31307197_31308151
          Length = 955

 Score = 1035 bits (535), Expect = 0.0
 Identities = 550/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaaggtagaggacgataaacgaagatcaggctaagtaatgaacatgccttaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaaaggtagaggacgataaacgaagatcaggctaagtaatgaacatgccttaatgaa 260

                                                                       
Query: 61  gcccactgctttgtattctaattttaaaaatctaacagcatgatgaatgattacaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccactgctttgtattctaattttaaaaatctaacagcatgatgaatgattacaaactg 320

                                                                       
Query: 121 gcatgtataccccatcagagttcctggtgtctgaatagaacaaccaacttgagaaaggga 180
            ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgtattccccatcagagttcctggagtctgaatagaacaaccaacttgagaaaggga 380

                                                                       
Query: 181 gtttaaatctagttacctctgatatcatacactactgttatatactgtgtcacacatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttaaatctagttacctctgatatcatacactactgttatatactgtgtcacacatcct 440

                                                                       
Query: 241 atgattacgacagaatctgatggggctagaacaaatctcaaaggtggcagttctcctgca 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 atgatgacgacagaatctgatggggctagaacaaatctcaaaggtggcagtgctcctgca 500

                                                                       
Query: 301 tctgactttacatggatacttctgagtgtgtaaaataaacatagaaagtaccaaaaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgactttacatggatacttctgagtgtgtaaaataaacatagaaagtaccaaaaaact 560

                                                                       
Query: 361 tgtctaagtctatttaggttactataacaaaatctatagttgtcaatgtataaacagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctaagtctatttaggttactataacaaaatctatagttgtcaatgtataaacagtgg 620

                                                                       
Query: 421 gcacatctcttatggttttagagttgaggtatacaaagagcaaagtgccaggagactgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacatctcttatggttttagagttgaggtatacaaagagcaaagtgccaggagactgta 680

                                                                       
Query: 481 tccagagaggttctgttcttcacagatgaatcttctccatggcctcagggactgggcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccagagaggttctgttcttcacagatgaatcttctccatggcctcagggactgggcaca 740

                          
Query: 541 agtttcatccatgag 555
           |||||||||||||||
Sbjct: 741 agtttcatccatgag 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)