BAC Information

Click to search

BAC

Clone NameMSMg01-503H11
Chromosome10 (Build37)
Map Location 55,268,390 - 55,268,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041898, LOC382460
Downstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503H11.T7 (MSMg01no503_h11.b1)MSMg01-503H11.TJ (MSMg01no503_h11.g1)
ACCAG578576AG578577
length714710
length of high quality
(start - end)
538 (79 - 616)424 (85 - 508)
definitionCHROMAT_FILE: MSMg01no503_h11.b1 PHD_FILE: MSMg01no503_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:45 2005CHROMAT_FILE: MSMg01no503_h11.g1 PHD_FILE: MSMg01no503_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTTTCCCACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAAGATTTCCAGACATATCTTGAATAGAAATATTT
TGTAAGGAACATATACTCTGAGTATTTGTTTACATTTCATATTTTGCTCT
TCAATCTGATTTCTGGTGACTTTTAATACTGTTTTTAAATTTGATGGCTG
TGGCAGGAAATATTACAAAATGAACCCGCCAACTCTCAGCAGGGCCAGGC
CAAGCTCCCACACTCCTGCCATCACCACCAACTCTCTAGAGCTGTCCCCT
GCACCAGGTGATCTCACTCGCTCTTTCTCTCTGCTCACCAGCTCATCAGC
CCTGCAGGGCCACACGGCTCCCATCTCTCAGACAGGGCCCCAAATACCAT
TTTCTTTCACAAAACAACCCATGTACCCCTGGTTAGCCATCTCAACACCT
AATTACCCAGTAGAATCAAGACTCTTAATATGCAATTAGCCAATCATATA
TATGTATCAACAATAACACAATGTACAAGATGCCAATGCAATATTTTCAG
AGCAAAATGATAATGAAAAAGCTTAAACCAATTATTCTAACCTTTTGATA
ACACCATGCCAGCCTCCATTCTGGTTCTCTCTCTCTCCTCCTGAGACCTC
TCTTGTTCTATCTCCCTTCTCCTGTCCAATCACAAGCTTCCCACTGTCCT
ATTGTGATTGGATA
CCTTTTTCTTTCGATGATAGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAA
CCCCATTTTTTAATGTGATTGTTTGAATTTCTGGAGTCCAGTTTCTTGAG
CTTTTTTATATATTGGATATTAGTCCCCTATCATATTTAGGATTGGTAAA
AATCCTTTCCCAATCTGTTGGTGGCCTTTTGTCTTATGGGTAGTGTCTTT
TGCCTTATGGAACCTTTGCAATTTTATGAGTTTCCACTTGTCAATTCTTT
ATCTTACAGCACAAGCCATTTCTTTTCTGTTTAGGAATTTTTCCCCTGTG
CCCATATCTTCAAGGCTTTACCCACTTTCTCCTCAATTAATTTCAGTGTC
TCTGGTCTTATGTGGAGGTCTTTGATGCACTTAGATGTGAGCTCTGTACA
GGGAGGTAAGAATGGATCAATTTTCATTCTTCTACATGAGAACCTACAGT
TGTACCAACATCATTTGTTGATAATGCAGTACTTTTTTCCACTGGATGGC
TTTAGCTCCCTTGTCATAGATCAAGTGATCATACGCGTGCGGGTTCATTT
CTGGTTCTTCAATTGTACTCCCTTGATCAATCTGTCTGTCATTGTACCAG
TACCATGAAATTTTTATCATATTTGTTTCCGTTTACCAGTTCATGTTTGG
CTCGGGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_h11.b1 MSMg01no503_h11.b1 CHROMAT_FILE:
MSMg01no503_h11.b1 PHD_FILE: MSMg01no503_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:45 2005
         (538 letters)



>mm_chr10_55268387_55269324
          Length = 938

 Score =  538 bits (278), Expect = e-157
 Identities = 308/318 (96%), Gaps = 2/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatcttgaatagaaatattttgtaaggaacatatactctgagtatttgtttacatttc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catatcttgaatagaaatcttttgtaaggaacatatactctgagtatttgtttacatttc 261

                                                                       
Query: 61  atattttgctcttcaatctgatttctggtgacttttaatactgtttttaaatttgatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atattttgctcttcaatctgatttctggtgacttttaatactgtttttaaatttgatggc 201

                                                                       
Query: 121 tgtggcaggaaatattacaaaatgaacccgccaactctcagca-gggccaggccaagctc 179
           |||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct: 200 tgtggcaggaaatattacaaaatgaacctgccaactctcag-aggggccaggccaagctc 142

                                                                       
Query: 180 ccacactcctgccatcaccaccaactctctagagctgtcccctgcaccaggtgatctcac 239
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 141 ccacactcctgccatctccaccaactctctagagctgtcccctgaaccaggtgatctcac 82

                                                                       
Query: 240 tcgctctttctctctgctcaccagctcatcagccctgcagggccacacggctcccatctc 299
           | ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  tggctcagtctctctgcccaccagctcatcagccctgcagggccacacggctcccatctc 22

                             
Query: 300 tcagacagggccccaaat 317
           ||||||||||||||||||
Sbjct: 21  tcagacagggccccaaat 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)