BAC Information

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BAC

Clone NameMSMg01-503H13
Chromosome10 (Build37)
Map Location 82,289,312 - 82,289,917
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik
Downstream geneTxnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503H13.T7 (MSMg01no503_h13.b1)MSMg01-503H13.TJ (MSMg01no503_h13.g1)
ACCAG578580AG578581
length704714
length of high quality
(start - end)
239 (83 - 321)591 (88 - 678)
definitionCHROMAT_FILE: MSMg01no503_h13.b1 PHD_FILE: MSMg01no503_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:45 2005CHROMAT_FILE: MSMg01no503_h13.g1 PHD_FILE: MSMg01no503_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATTTTCCTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCACTCTGTATCCCAAGCTGGCCTCGAACTCGGAAA
TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCTACCA
CTTGCCCGGCTTCTTCTTCTTCTTCTTTTTTTTTTTTAAAAACATTTATT
TATTTATTGTATGTGAGTACACTGTAGCTGTCTTCAGACACACCGGAAAA
GGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCACGTGGTTGCTGG
GAAATGAACTCAGGACCCCTGTATTATACAGTTGGTGCTCTTAACTGCTT
AGCCATCTCTCTAGCCCCGTTTTTTTTTTTTTAAAAGACATGGTTTTTCT
GTGTAGCCCTGGCTGTCCTGAAACTCACTCTGTGGCCTCAAACTCAAGAG
ATTCACTTGCCTCTGCCTCCCAAGGGCTGCCTGGCAACTTTTTTTTTTTT
TTTTTAAACCACTAAAGTGACTTTATAAAACACCTGCCCTTTAAAGGTGA
CTTTTTGCCCACCTCGTAATAAAGCTGCAGGCATCTTCAGGGTTGGTGAA
TGCTCTCCACTGTGCAGTTGGGATTTCATGGCGGTCCATAAACTCTTTGG
CAAACTTCTTACTGGACTCTAATTGAGCCGCTTGTGCCGCGGGGCCCAAG
CATG
CCTTTCTTTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCATATATCA
ATCTGCGAGAATGGCTTGGCATTTAAGAGTACATAGAAGAGGCTGTTTTA
CACCTTGCTGAGTGTAAGCTCAAGGATGCAGGCAGCCATTCAGAGCCTGT
TGTGCCTGGGGAAGTCACATGGCTAGTGTGTGTACTCCGCTGCAGGACCA
TCTGTGTAGAGTCCCGCAGAATTGTTAAGTCTGCCACGTGAGATTGCCTG
CCTCATTTAACAGTGTGTTAAAACATATCCCCACCTTTTTCTGAATCTTG
AACTGTATACAGCTCTGAGAATTACCGTGGCTCGAGAGACTACGGTAATT
AGCTGCCTCCCTAAAGCCAGGCATGTGTCCTAGATTTCTAGTTTTTGTTT
TGTTTTGTTTTTGTTTTTGTTTTAAAAGACATGTAATGATGTTGTAACCA
AATTGTCAACATAATGAAGTAAATAAAGAAGAGGCTGAGGGCTGGACAGG
GGACAGGGTGAAGGGAGCTGGGGAGCTGGGACAGAAGCTTGTTGTTACTT
AGCTTTGGGAGGGAGAGAAACGGGTTGAGGCAGCATAACTCAGTCCCTAT
GTCCAGAAAGACAATGGGCATGTGAACCGGCGAGTTAATGGCAGCGTGTG
GTGTTTTTTGGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_h13.g1 MSMg01no503_h13.g1 CHROMAT_FILE:
MSMg01no503_h13.g1 PHD_FILE: MSMg01no503_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:45 2005
         (591 letters)



>mm_chr10_82289127_82290117
          Length = 991

 Score = 1052 bits (544), Expect = 0.0
 Identities = 584/606 (96%), Gaps = 15/606 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcatatatcaatctgcgagaatggcttggcatttaagagtacatagaagaggctgtt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tctgcatatatcaatctgagagaatggcttggcatttaagagtacatagaagaggctgtt 245

                                                                       
Query: 61  ttacaccttgctgagtgtaagctcaaggatgcaggcagccattcagagcctgttgtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttacaccttgctgagtgtaagctcaaggatgcaggcagccattcagagcctgttgtgcct 305

                                                                       
Query: 121 ggggaagtcacatggctagtgtgtgtactccgctgcaggaccatctgtgtagagtcccgc 180
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 306 ggggaagtcacatggctagtgtgtgtactcctctgcaggaccatctgtgtagagtcccac 365

                                                                       
Query: 181 agaattgttaagtctgccacgtgagattgcctgcctcatttaacagtgtgttaaaacata 240
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 366 agaattgttaagtctgccacgtgggattgcctgcctcatttaacagtgtgttaaaacaga 425

                                                                       
Query: 241 tccccacctttttctgaatcttgaactgtatacagctctgagaattaccgtggctcgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tccccacctttttctgaatcttgaactgtatacagctctgagaattaccgtggctcgaga 485

                                                                       
Query: 301 gactacggtaattagctgcctccctaaagccaggcatgtgtcctagatttctagtttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gactacggtaattagctgcctccctaaagccaggcatgtgtcctagatttctagtttttg 545

                                                                       
Query: 361 ttttgttttgtttttgtttttgtttt------aaaagacatgtaatgatgttgtaaccaa 414
           ||||||||||||||||||||||||||      |||||||| |||||||||||||||||||
Sbjct: 546 ttttgttttgtttttgtttttgtttttgttttaaaagacaagtaatgatgttgtaaccaa 605

                                                                       
Query: 415 attgtcaacataatgaagtaaataaagaagaggctgagggctg---------gacagggg 465
           |||||||||||||||||||||||||||||||||||||||||||         ||||||||
Sbjct: 606 attgtcaacataatgaagtaaataaagaagaggctgagggctgaaggctgaggacagggg 665

                                                                       
Query: 466 acagggtgaagggagctggggagctgggacagaagcttgttgttacttagctttgggagg 525
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 666 acagggtgaagggagctggggagctgggacggaagcttgttgttacttagctttgggagg 725

                                                                       
Query: 526 gagagaaacgggttgaggcagcataactcagtccctatgtccagaaagacaatgggcatg 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gagagaaacgggttgaggcagcataactcagtccctatgtccagaaagacaatgggcatg 785

                 
Query: 586 tgaacc 591
           ||||||
Sbjct: 786 tgaacc 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)