Query= MSMg01no503_i06.b1 MSMg01no503_i06.b1 CHROMAT_FILE:
MSMg01no503_i06.b1 PHD_FILE: MSMg01no503_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
(644 letters)
>mm_chr10_106120630_106121672
Length = 1043
Score = 938 bits (485), Expect = 0.0
Identities = 550/579 (94%), Gaps = 14/579 (2%)
Strand = Plus / Minus
Query: 1 gaattcctaatattttc-cagaaacaaaaatgttgtaggcatactggaaaagagtatctg 59
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gaattcctaatataaacacagaaacaaaaatgttgtaggcatactggaaaagagtatctg 957
Query: 60 aagctaccgggattttagagagatacatgatacattctaaggtttcattgaagaataaga 119
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 956 aagctaccgggattttagagagatacatgatacattctaaggttacattgaagagtaaga 897
Query: 120 agctctattaacacttgaatatagaatgtctgtctttataggactagattgggaaagatt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ggctctattaacacttgaatatagaatgtctgtctttataggactagattgggaaagatt 837
Query: 180 cttggttcctgcaatccagggagttttcagtaatcttcaaacagaaacacacacacacac 239
||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 836 cttggttcctgcaatccagggagttttcagtaatcttcaaacataa------------ac 789
Query: 240 acacacacacaaatataatgatacttttatggttagatagatgagagacaaatgatggat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 acacacacacaaatataatgatacttttatggttagatagatgagagacaaatgatggat 729
Query: 300 tacatacagaggatagaaaaaatagacaaacacaagagttaaaaatacaaatgcatttac 359
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 728 tacatacagaggatag-aaaaatagacaaacacaagagttaaaaatataaatgcatttac 670
Query: 360 tggctctgccagctgagaaaggtgaagactcaggacccagtggacagagaagcaacgcag 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 669 tggctctgccagctgagaaaggtgaagactcaggacccagtggacagagaagtaaggcac 610
Query: 420 tggcctttgatctcacgtgattcaaactttagactgatctttttttctgactgcagagac 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 tggcctttgatctcacgtgattcaaactttagcctgatctttttttctgactgcagagac 550
Query: 480 ttcctgagagtttcacttttagatatgccttttgaaaaccctctaaagagtcttataaag 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 549 ttcctgagagtttcacttttagatatgccttttgaaaaccctctgaagagtcttataaag 490
Query: 540 cagcgatatctttcctcaggatccaaacagagtactttt 578
|||||||||| ||| ||||||||||||||||||||||||
Sbjct: 489 cagcgatatcgttcttcaggatccaaacagagtactttt 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_i06.g1 MSMg01no503_i06.g1 CHROMAT_FILE:
MSMg01no503_i06.g1 PHD_FILE: MSMg01no503_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
(433 letters)
>mm_chr10_106063779_106064611
Length = 833
Score = 777 bits (402), Expect = 0.0
Identities = 426/434 (98%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 1 aaagctcagcttatcaagttttaagaaactattatttagatgtatttccaatattgcttt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 201 aaagctcagcttatcaagttttaagaaactattatttagatgtatttcaaatatttcttt 260
Query: 61 tacactcgacttccatgaaacttcaagtgtctgggacaactatatttaaaccttataaag 120
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 taccctcgacttccatgaaacttcaagtgtctgggacaactatatttaaactttataaag 320
Query: 121 ttcatattcttcatttacttctctctgtatatattcagaatatgttttgcaattgtctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatattcttcatttacttctctctgtatatattcagaatatgttttgcaattgtctgt 380
Query: 181 gtattgcaattgtagtggattctttcatgctgcttggaaaacaatgctatatattttcta 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattgcagttgtagtggattctttcatgctgcttggaaaacaatgctatatattttcta 440
Query: 241 cacataacgttgtgctgtgatatagattattttgtgtatcagtgttatacatttatttta 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cacataacgttgtgctgtgatatagattattttgcgtatcagtgttatacatttatttta 500
Query: 301 tgtattcatggtacatacacatgggtgtgcaggtaaattcacctgcaaaatgtcaggtgt 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatgcatggtacatacacatgggtgtgcaggtaaattcacctgcaaaatgtcaggtgt 560
Query: 361 cttcctctgtcgtgctctacctgttgctttgaga-aaaaatctcttgctaaaccattggc 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 cttcctctgtcgtgctctacctgttgctttgagacaaaaatctcttgctaaaccattggc 620
Query: 420 tcagtttttctatg 433
||||||||||||||
Sbjct: 621 tcagtttttctatg 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
