BAC Information

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BAC

Clone NameMSMg01-503J17
Chromosome10 (Build37)
Map Location 88,271,285 - 88,271,505
singlet/doubletsinglet
Overlap geneUtp20
Upstream geneENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J17.T7 (MSMg01no503_j17.b1)MSMg01-503J17.TJ (MSMg01no503_j17.g1)
ACCAG578684AG578685
length821737
length of high quality
(start - end)
221 (64 - 284)553 (85 - 637)
definitionCHROMAT_FILE: MSMg01no503_j17.b1 PHD_FILE: MSMg01no503_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:56 2005CHROMAT_FILE: MSMg01no503_j17.g1 PHD_FILE: MSMg01no503_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
CGGATCCGCGGAATTCAGAGAGATTCTCCTTGCTCTGTCTCTCAAGTACT
AAGATTAAAGAGTATGCATTACAATGCCCAGCCCAGGTGCATATAAACGA
AAAATTCATTTGTTATGCTGTGGATGAAACCAAAGGTTCACATACACTAG
GCATCCCCTTCTCTTACCTCTTTAGTGAGGTACCTATGCATGCTTCTACA
TCTTGCCTCACAGCGTGGGACCTGCATTTCCAAGAACCTTCCCTGTTGTT
ATCTGTTTGCTGTGTGATGCGATGTACCTTCTGCTGACTCTGGAGGAAGC
ACTGGTTCATTATTGAGAAATCTGGTGGTGGTTCCTAGTAGGCTGAAGCC
AAGGCTCTGGGTTTACAATATTACAGGGCAAGGGGGCACCCCCCATCCAA
TTTTCCCGCCCCGAAGGGCTAGGGTTGGTGGGAAAGCTCCCCCCCCGGGG
GGAAAACCCCTTAATGGGAAAAAAAGTCCAAGAGTCTTTTCCGGGACCTC
CCCCCGGGGTTTCTTTGTTTCCCTTGGGCCCCCGGGAAAACAGGGGCTCC
AAAAAGGTCCCTGAAGAGATTAGGGGGTTAATTATTAGGGGGGGGGAAAG
AGAAACAGGGCGCCTAAAAAAAGGGCTGGCTCTCCAAAGTTTTCAAAAAT
TCTTTTTGTGGCAGCGTTTCCGGGGGGCCCCTCTGTGTTCCCCCGGGCTC
CAATATAGGTTTTTGGGCCCTTAAGGGGAAAAAATTTTTTTTATAAAAAC
CTCCAAATAAATATCGCCGGC
CCTTTTTATTCTATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAATAGTGATCG
GTGTGGGAGATTTGAGCTGGAATGCCGAGGAGACAGACATACACCAGCAG
GAACCTGAACCCAGGCTAGAATTGCTGTTGCAATTTCCAAGTCCCAGCAA
ACACATTTAAAAAACATATAATCTGCTCCTCCAGCCGAGCAAGATGCCCA
AAGGAAAGAAGGCCAAGGAGAAGAAGGTGGCTCCAGCCCCAACCGTCGTC
AAGAAGCTGGAGGCCAAAAAGGTGGTCAATCCTTTGTTTGAGAAAAGGCC
CAAGAACTTCGTCAGCATTGGTCAGAACATCCAGCCCCAAAGAGATCTCA
CTTTTTTTTTTTCAAATGGCCCTGTTACATCAGGCTGCAGCAGCAAAAAG
CCATCCTCTATAAGCGGCTCAAAGTACCTCCTATAGTTAATCAGTTCACC
CAGACTCTGGACAGGCAAACAGCTACTCAGCTGCTTAAGCTTGCCCACAA
GTACAGGACAGAGACAAAGAGAAGAAGCAAAGGCTACTGGCCCGTGTGAG
AAGAAAGCTGTTGGCAAAGGGGACATCCCAACTAAGAGTCCTCCTGTCCT
CCGAGCAGGGGTCAATACAATCACCACCTTGGTGGAGAACAAAAAAGCTC
AACTGGTGGGGATGGGCCATGATGTAGACTCCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j17.b1 MSMg01no503_j17.b1 CHROMAT_FILE:
MSMg01no503_j17.b1 PHD_FILE: MSMg01no503_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:56 2005
         (221 letters)



>mm_chr10_88271085_88271705
          Length = 621

 Score =  381 bits (197), Expect = e-110
 Identities = 215/221 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagagagattctccttgctctgtctctcaagtactaagattaaagagtatgcattaca 60
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcagagagatccaccttgctctgtctctcaagtactaagattaaagagtatgcattaca 362

                                                                       
Query: 61  atgcccagcccaggtgcatataaacgaaaaattcatttgttatgctgtggatgaaaccaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 atgtccagcccaggtgcatataaacgaaaaattcatttgttatgctgcggatgaaaccaa 302

                                                                       
Query: 121 aggttcacatacactaggcatccccttctcttacctctttagtgaggtacctatgcatgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 aggttcacatacactaggcatccccttctcttacctctttagtgaggtacctatacatgc 242

                                                    
Query: 181 ttctacatcttgcctcacagcgtgggacctgcatttccaag 221
           ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 ttctacatcttacctcacagcgtgggacctgcatttccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)