BAC Information

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BAC

Clone NameMSMg01-503M12
Chromosome10 (Build37)
Map Location 10,134,569 - 10,135,020
singlet/doubletsinglet
Overlap gene9130014G24Rik
Upstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110
Downstream geneRab32, EG382450, Grm1, Shprh, Fbxo30, Epm2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503M12.T7 (MSMg01no503_m12.b1)MSMg01-503M12.TJ (MSMg01no503_m12.g1)
ACCAG578816AG578817
length701706
length of high quality
(start - end)
184 (134 - 317)452 (89 - 540)
definitionCHROMAT_FILE: MSMg01no503_m12.b1 PHD_FILE: MSMg01no503_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:10 2005CHROMAT_FILE: MSMg01no503_m12.g1 PHD_FILE: MSMg01no503_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTCTTTTCCACCTAAAATTGCGGCCGTTAAACGAATACTATTTTCATA
ACAGGGCGGAATTCTCACTTTTTCAAAAAAAGAGCTGAGGAGCACCTGAA
AAAATGGTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCC
TGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGAATGCAAGCTTGTATAACCACTCTGGAAATCAGTCTGGAGGT
TCCTCAGAAAATTGGATATTTTTTTTACCAGAGGATCCTGCAATACCTCT
CCTGGGCATATATCCTGAAGATGCCCCAACCGGTAAGAAGAACACATGCT
CCACTATGTTCATAGCAGCCTTATTTACAACAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA
TTCAATGGAGTACTACTCAGCTACTAAAAAGAATGAATCTATGACATTCT
TAGGCAAATGGTTGGATCTGGAGGGCATCATCCTGAGTGAGGTAACATAT
TCACCAAATGTTTCTAAAAGTGATCGGGCCGTAACATTGTGCATTCCTAC
GTGTAGTTCCATGTATNTCAACATTTCTTATAACCCCTGAACTCCCCAAT
G
TTTTTTTTATCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXTTTACAA
ACAAAGAGGTGACACTATAGAATTTTCCAACAAAATCCATAAATATCACG
TAATTCCTAAACATGTTAATTAAAAAGTAATGCCATTGGAAACCTTAATA
ATACCGTTAAACAAAAACCTGGCCTCCAAATAGAATGTGAAATAGAATTC
CACTCTGAGCAAAAGTATAGAGCACAATACAGAATACATGCATAGGAAGA
AAACCAAATTATATATACCAACATGTATAGAATGCCTATGCCTAAATGTT
TACACTATGCATAATTTAACTCTTTTTTTATTGGCTACACTTATTAACTT
TTCTTTTCTTGATTGTATTTCTTTTCTTGTATTGTCTAAAAACAAAAAGC
ATTTATTCTGCATTGCTTTATAATGTAAGAAGACCATGGCAGTTGCTCCC
CAAACTTAGCGGAAATTTATGTACATCATCCCACTTTAAGAATATATGGG
GCTGCAGAGATGGCTCAGCAGTTTAGAGCACTGGCTGCTCCCAAAGATGT
CCTGAGCTCAATTTCCAGCAACCACATGGTGGCTCTCAATCATCTGTAAC
GGGATCCAATGTCCTCTTCTGGTACATCCGAAGAGAGTGACTATGTACTC
GCATACATAAAATAAATAAATGAATGAATAAATCTCTAAAAAATTACATA
AAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_m12.g1 MSMg01no503_m12.g1 CHROMAT_FILE:
MSMg01no503_m12.g1 PHD_FILE: MSMg01no503_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:10 2005
         (452 letters)



>mm_chr10_10134369_10135220
          Length = 852

 Score =  812 bits (420), Expect = 0.0
 Identities = 444/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatatcacgtaattcctaaacatgttaattaaaaagtaatgccattggaaaccttaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatatcatgtaattcctaaacatgttaattaaaaagtaatgccattggaaaccttaa 260

                                                                       
Query: 61  taataccgttaaacaaaaacctggcctccaaatagaatgtgaaatagaattccactctga 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 taataccgttaaacaaaaacctggcctccaaatggaatgtgaaatagaattccactctga 320

                                                                       
Query: 121 gcaaaagtatagagcacaatacagaatacatgcataggaagaaaaccaaattatatatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaagtatagagcacaatacagaatacatgcataggaagaaaaccaaattatatatac 380

                                                                       
Query: 181 caacatgtatagaatgcctatgcctaaatgtttacactatgcataatttaactctttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  
Sbjct: 381 caacatgtatagaatgcctatgcctaaatgtttacactatgcataatttaactctattac 440

                                                                       
Query: 241 tattggctacacttattaacttttcttttcttgattgtatttcttttcttgtattgtcta 300
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cattggctacacttattaacttttcttttcttgattgtaattcttttcttgtattgtcta 500

                                                                       
Query: 301 aaaacaaaaagcatttattctgcattgctttataatgtaagaagaccatggcagttgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacaaaaagcatttattctgcattgctttataatgtaagaagaccatggcagttgctc 560

                                                                       
Query: 361 cccaaacttagcggaaatttatgtacatcatcccactttaagaatatatggggctgcaga 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccaaacttagtggaaatttatgtacatcatcccactttaagaatatatggggctgcaga 620

                                           
Query: 421 gatggctcagcagtttagagcactggctgctc 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 gatggctcagcagtttagagcactggctgctc 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)