BAC Information

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BAC

Clone NameMSMg01-503O10
Chromosome10 (Build37)
Map Location 123,860,504 - 123,860,726
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790
Downstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503O10.T7 (MSMg01no503_o10.b1)MSMg01-503O10.TJ (MSMg01no503_o10.g1)
ACCAG578908AG578909
length697702
length of high quality
(start - end)
---224 (322 - 545)
definitionCHROMAT_FILE: MSMg01no503_o10.b1 PHD_FILE: MSMg01no503_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:19 2005CHROMAT_FILE: MSMg01no503_o10.g1 PHD_FILE: MSMg01no503_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTATAAAAAAAAATAGAGGAGGGAGAGATTGCCCCCTTCCTATCTGCN
GGANNNNGNGGTTACCCCACCCCGANNGGNNNNNNANNNGNGNNANANNN
NNNNNGANNTTTAACCCAAAAAAAAGGGGTTGGAGAAGTTTAGGTTACTT
GAGATTTTCTCCGGGAGAGAGGCTGGAAACCTTTGTCTGTCCGCCTGACC
TCCTGCCTGTCTGTCTCCGCTTAGTGGACACCAGGATTTTTTTTAGCCTA
CCCCCCCCTATAGTCTTACATATGGCGCTATTCAGAGCAAAACAACAGGC
CCTTTTTGTGCGTTTAAAGAGCCCAGAAGANAAGNCAAACCGCAGCAATT
TTTTTCCGCCCCCAAATACTGTGAGAAACTTTCCACAATTGACCTGCGGG
AGTAGAAGGTTGACCATCTAATACTGAATCCCCTGACCTGTCGTATAGAA
CAAATATCCGAATACTGGCATACCGCTATCTTTCTCAGATGACAGTTTTG
ATACCGTCAATAGGATAATAAATTTCACTACGCCCTTAACACCACCAAGT
CACGTGCTTTGAACTAAGAAATAAAGAGTATTTCTGTATTCCCCACATAA
AATATCGCCACCGGAATCGCTTTTTTATTATTCAATGGTCCATGGAAAGC
ACGCTTAGTTTTAACGTTAATTTTGGTATGCAAAGTCTTACCCCATT
TTTTTCTTACGAAATAGTGGTAGGCCTGGNGGNCGCCTGGCTTACCACAA
AAGGTGAACTATAGAAGTTTCCACAAAATCCCTTCTGCAGCTGGCTAAAC
TACCACCAAGTGTTTTACAAACATATTCTACTTAAGAGTCTTTCACACAT
TGTTGCTGTTGTTTTGCTTTGATTTTTGTTTGTTTTGTTTAAGGTTTTGG
TTTTCCTTTTGTTGTTTATGTTGGATAGATATGTGGGTGTTGGCTGGATC
TCTCCCAAATCTACTGCTTGTCATCTCTTTTCTGGTGATGTGAGAGGAAG
CAGTAAGTTGACTTTTNNGTATTTTCTCACCAGCAGGCATCTAAGCATTT
TCAGAGGAGGCACATACTCGACATTCCATAGGTCACTCTCCCACCTGTTG
GAGCACAGATGTCTCACCAAGGTTCAGTAACTCCGCCATTCTTCACTTGT
CTGCCCTACTCCTCCTGATGAGTTTGATTTATTAGATTAATGTTATGGCT
TGAGTGAGATTTCCAAGCAATCAATAGTTTTGTGATCCACATTTGTAGAG
GCCAGAGGACATATTATGGCTCCTGAACAGAATCTTATATGTATATCGCT
GTTGGATATCATAGTGCAAACTATTTCTGATCTTTTTTTAAGGAGGGCAT
AACGTCTGTTGAGGAGCCTAAGAGGTTATGAACGGTTACAACTCTTCCAC
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_o10.g1 MSMg01no503_o10.g1 CHROMAT_FILE:
MSMg01no503_o10.g1 PHD_FILE: MSMg01no503_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:19 2005
         (224 letters)



>mm_chr10_123860303_123860926
          Length = 624

 Score =  431 bits (223), Expect = e-125
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   tttctcaccagcaggcatctaagcattttcagaggaggcacatactcgacattccatagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tttctcaccagcaggcatctaagcattttcagaggaggcacatactcgacattccatagg 365

                                                                       
Query: 62  tcactctcccacctgttggagcacagatgtctcaccaaggttcagtaactccgccattct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcactctcccacctgttggagcacagatgtctcaccaaggttcagtaactccgccattct 305

                                                                       
Query: 122 tcacttgtctgccctactcctcctgatgagtttgatttattagattaatgttatggcttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcacttgtctgccctactcctcctgatgagtttgatttattagattaatgttatggcttg 245

                                                      
Query: 182 agtgagatttccaagcaatcaatagttttgtgatccacatttg 224
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agtgagatttccaagcaatcaatagttttgtgatccacatttg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)