BAC Information

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BAC

Clone NameMSMg01-505A02
Chromosome10 (Build37)
Map Location 11,686,764 - 11,687,255
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm1, Shprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172, Stx11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505A02.T7 (MSMg01no505_a02.b1)MSMg01-505A02.TJ (MSMg01no505_a02.g1)
ACCAG579748AG579749
length750758
length of high quality
(start - end)
638 (50 - 687)555 (80 - 634)
definitionCHROMAT_FILE: MSMg01no505_a02.b1 PHD_FILE: MSMg01no505_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:48 2005CHROMAT_FILE: MSMg01no505_a02.g1 PHD_FILE: MSMg01no505_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTTCCTCTGTACCCCATTTTTTAATAGGGTTATTTG
ATTTTCTGGAGTCCAGCTTCTTGAGTTCCTTGTATATATTGGATATTAGT
CTCCTATCAGATTTAGGAGTGGTAAAGATCCTTTCACAATCTGTTGGTGG
CCTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATT
TTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATCTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCC
TGTCTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCTT
TGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCTATT
CGCATTCTTCTACATGATAACTGCCAGTTAAGCCAGCACCATTTGTTGAA
AATGCTGTCTCTTTTCCACTGGATGGTTTTAGATACTTTGTCAAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTATTTTCCAT
TGTTCTACCTGACTGTCGCTGTACCAGTACCTTGCAGTTTATATCACAAT
TGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCACCAGAGGTTC
TTTTATTATTGAGAATAGTTTTTTGCTATTCTAGGTTTTTTATTATTCCG

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTTCTGTACATAGATGGC
ATGGTTATCACAGGCTCATAGCTGCTGAGGTTTCCAACACAAGCCCTGTA
CAAGACCAAGCCAGACACACTTCCAGCTTAGACGGGGTAGACAGGCCATA
GGCCTCACCATGTACTAAAGAGCTGTCATCAGTGAATACTGCTATGGGGA
AGGAGAACCATTCATAGCTGAGACAGAATTCCCATGCTCCAGTAGAATGT
CTATACCCATGCACACACAGATAGCAGTAACTAAATTTAGTGGCTTACCA
AAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAGTGAAAA
CAACATCAACAACAAAAAATACCCCCAAAACCAGGATATGAAGTCAGTAT
GGAGCAAATTAGAGCAACATTATGTAATTAAGGGTAGAAATGATATTAGA
CATGATCAGATCTCCTTATACATATTTATAAAATCCACAAATATATAACA
TTTTAAATTTGATTAGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTTTATACACATGCTAAGGCACATGTGTGGAGGTCAGAGGACAACCTGA
GAGCGTGGGCTCCCTCTTCCCACCATGTATTTCCCAGAAATGAAAGTAAG
ATTCTCAGGCTTGGGCACAAATACCTTTACCTGCTGAGTAATCTTTCTAG
CCACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_a02.g1 MSMg01no505_a02.g1 CHROMAT_FILE:
MSMg01no505_a02.g1 PHD_FILE: MSMg01no505_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:48 2005
         (555 letters)



>mm_chr10_11686301_11687255
          Length = 955

 Score =  770 bits (398), Expect = 0.0
 Identities = 458/506 (90%), Gaps = 44/506 (8%)
 Strand = Plus / Minus

                                                                       
Query: 80  agccagacacacttccagcttagacggggtagacaggccataggcctcaccatgtactaa 139
           |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct: 955 agccagacacacttccagattagacggggtagacaggctacaggcctcaccatgtactaa 896

                                                                       
Query: 140 agagctgtcatcagtgaatactgctatggggaaggagaaccattcatagctgagacagaa 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 agagctgtcatcagtgaatactgctatggggaaggagaaccattcatagctgagacagaa 836

                                                                       
Query: 200 ttcccatgctccagtagaatgtctatacccatgcacacacagatagcagtaactaaattt 259
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 835 ttcccatgctccagtagaatgtctatacccatgcacacacagatagtagtaactaaattt 776

                                                                       
Query: 260 agtggcttacca------------------------------aaaccaaaccaaaccaaa 289
           ||||||||||||                              ||||||||||||||||||
Sbjct: 775 agtggcttaccaaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaa 716

                                                                       
Query: 290 ccaaaccaaaccaaaccaaaccaaagtgaaaacaacatcaacaacaaaaaatacccccaa 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ccaaaccaaaccaaaccaaaccaaagtgaaaacaacatcaacaacaaaaaatacccccaa 656

                                                                       
Query: 350 aaccaggatatgaagtcagtatggagcaaattagagcaacattatgtaattaagggtaga 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aaccaggatatgaagtcagtatggagcaaattagagcaacattatgtaattaagggtaga 596

                                                                       
Query: 410 aatgatattagacatgatcagatctccttatacatatttataaaatccacaaatatataa 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aatgatattagacatgatcagatctccttatacatatttataaaatccacaaatatataa 536

                                                                       
Query: 470 cattttaaatttgattagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttata 529
           |||||||||||||||||||||              |||||||||||||||||||||||||
Sbjct: 535 cattttaaatttgattagttt--------------tgtgtgtgtgtgtgtgtgttttata 490

                                     
Query: 530 cacatgctaaggcacatgtgtggagg 555
           ||||||||||||||||||||||||||
Sbjct: 489 cacatgctaaggcacatgtgtggagg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)