BAC Information

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BAC

Clone NameMSMg01-505F23
Chromosome10 (Build37)
Map Location 49,346,325 - 49,346,938
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652, Ascc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505F23.T7 (MSMg01no505_f23.b1)MSMg01-505F23.TJ (MSMg01no505_f23.g1)
ACCAG580028AG580029
length775758
length of high quality
(start - end)
399 (52 - 450)618 (81 - 698)
definitionCHROMAT_FILE: MSMg01no505_f23.b1 PHD_FILE: MSMg01no505_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:16 2005CHROMAT_FILE: MSMg01no505_f23.g1 PHD_FILE: MSMg01no505_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATACTTTATATTGCTTTGGTAATCAGGAAACAAAACTAG
ATATTCCAGAGATCTAGGATAAAAACAAATGCTACTTGTCTAAAATATAA
AGAGTAGTGATAAAATAACTTCAATTGCTATACTCATATACCTATGCCTT
ATTTAGCCATCATCAGAAAAGCTTCCTACAACAGTAGATGGCAGCAAATA
CAGAAACTCACAGCCACCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCATACACACAC
ACACACACACACACACAAACCACAAACACAGGAGAGAGAGAGAGAAAGAG
AGAAAGAGAGAGAGGTAGACGGAGAGGGAGAGGAAGGGAGGGGGGAAGGG
ATAACACCCCACNCCCCCCCNTCGCGTGAGGCTCCCCCCTGGACTTTCGT
TTTTTTTTTATGTGAGCACGCACGCCGTGTGTATACAAATATACACACAT
ATCTCCCTCCATTTTCTGGGTTGAGAGCTGGGAAAAAAGAATGAGAGATG
GCTATGGATCCCCACAATTCTCTCTATTATAATAGTGAGTAGGTGGTTCT
CTGCTGAATATCTGAGATGGTTTATAGTGAGCTCTATTGTGAAATACTTG
ATAGAAAGACTCTATGTGTTTTCCGCTCGTGTGGGGGGGTGGTACCAACT
TCATATTTTTAAATACTACTTTCCC
NTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGGATATTACAAGCCA
AGCTTTGGTAGTGAAGGATTTGGAAAACAGAAAGCTGGTGATAGTGTATT
AGAACAAGGGGACCATTTTCCACTCCCAGCAACCAACAGAACTCGGAAAC
TTTGGCCTCTTGGCTCTGACTTTATAATTACAAGTTATATTTCACAGTGG
CAGAGTAGTTAAAGCATTTAAAACCCAAAGCTGCTTATCACTTCACATAC
TTACTCAGAAGAAGAGAAGAATGGATGGATGGATGCCACTGTTTGATCAT
TTTCTCCAGTCTTACATAGCACAGAATAGCTTCCCAAGGAATGGTGTCAC
ACACAAGTGCATGTCTTCAAATTTCAATTAAGATGGTGTCTCACACACAA
CCTCAGAGAGCCACTGTCAATGTGACTTTAGGTTGTTTTATGTTGAAAAT
TAGCACAAACCTTCCCTTGGAAGCTCTTAAGATGATGACAATCACTGAAT
AAGATAAAGTATTCCAAGCTAAGGATTGTTAAATTTTAATATATTGTAAT
TTAAGATGAAATGAAAACTCACGTTTGACACTAAGAGGTCAGACACAAAA
TGTTACTAAGATCTGTAAACTGCAGTATATAGAATATTGGATGAGACAGG
AAGAATACAGTGTGACAGAGGACAAACCCAGAATCATGTTATGTTGAGAA
AGATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_f23.g1 MSMg01no505_f23.g1 CHROMAT_FILE:
MSMg01no505_f23.g1 PHD_FILE: MSMg01no505_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:16 2005
         (618 letters)



>mm_chr10_49346121_49347138
          Length = 1018

 Score = 1172 bits (606), Expect = 0.0
 Identities = 612/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tggatattacaagccaagctttggtagtgaaggatttggaaaacagaaagctggtgatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tggatattacaagccaagctttggtagtgaaggatttggaaaacagaaagctggtgatag 264

                                                                       
Query: 65  tgtattagaacaaggggaccattttccactcccagcaaccaacagaactcggaaactttg 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtactagaacaaggggaccattttccactcccagcaaccaacagaactcggaaactttg 324

                                                                       
Query: 125 gcctcttggctctgactttataattacaagttatatttcacagtggcagagtagttaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctcttggctctgactttataattacaagttatatttcacagtggcagagtagttaaag 384

                                                                       
Query: 185 catttaaaacccaaagctgcttatcacttcacatacttactcagaagaagagaagaatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttaaaacccaaagctgcttatcacttcacatacttactcagaagaagagaagaatgg 444

                                                                       
Query: 245 atggatggatgccactgtttgatcattttctccagtcttacatagcacagaatagcttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggatggatgccactgtttgatcattttctccagtcttacatagcacagaatagcttcc 504

                                                                       
Query: 305 caaggaatggtgtcacacacaagtgcatgtcttcaaatttcaattaagatggtgtctcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaggaatggtgtcacacacaagtgcatgtcttcaaatttcaattaagatggtgtctcac 564

                                                                       
Query: 365 acacaacctcagagagccactgtcaatgtgactttaggttgttttatgttgaaaattagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acacaacctcagagagccactgtcaatgtgactttaggttgttttatgttgaaaattagc 624

                                                                       
Query: 425 acaaaccttcccttggaagctcttaagatgatgacaatcactgaataagataaagtattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaaccttcccttggaagctcttaagatgatgacaatcactgaataagataaagtattc 684

                                                                       
Query: 485 caagctaaggattgttaaattttaatatattgtaatttaagatgaaatgaaaactcacgt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 caagctaaggattgttaaattttaatatattgtaatttaagatgaaatgaaaactcacat 744

                                                                       
Query: 545 ttgacactaagaggtcagacacaaaatgttactaagatctgtaaactgcagtatatagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgacactaagaggtcagacacaaaatgttactaagatctgtaaactgcagtatatagaa 804

                         
Query: 605 tattggatgagaca 618
           ||||||||||||||
Sbjct: 805 tattggatgagaca 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)