BAC Information

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BAC

Clone NameMSMg01-506B14
Chromosome10 (Build37)
Map Location 60,712,782 - 60,713,354
singlet/doubletsinglet
Overlap geneAdamts14
Upstream genePsap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik
Downstream genePrf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506B14.T7 (MSMg01no506_b14.b1)MSMg01-506B14.TJ (MSMg01no506_b14.g1)
ACCAG580575AG580576
length764762
length of high quality
(start - end)		572 (75 - 646)580 (75 - 654)
definitionCHROMAT_FILE: MSMg01no506_b14.b1 PHD_FILE: MSMg01no506_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:10 2005CHROMAT_FILE: MSMg01no506_b14.g1 PHD_FILE: MSMg01no506_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGAAAGATCCG
CGGAATTCACATTTTGTCATCAGCTATTTGTGAAATACCATAGTAAGCGG
TCTAGCCTACTTTATAGAGATGATGTGGCTTGTATGTGCATGTGTGTGCC
TGCATGCGCGCACACATGTGTGTGCATGTGCATGTATGTTTGTGTGTGTG
TCTATATCCATATGCAAGCCTATATATTAACATTATACATCTCCTCATGT
TTTATTGGCCTCTTTGATTACAGTCTCCGTTGATGGCTAATAACATTTGA
TGGGTTTGGCCAAGGTTAGATTTTTGTGTTTTGATTTCCAAGGCCACCTT
TTGATTTTATTTTTTTTAAGGACTATTTTGATGTGGGCTGTATGGGAGCT
TGCAAGTGGAGCCTGCACCCTCAGTGCACTAGCCTCGCTAGGTTTCTGAG
GGGCTGTTAGCCCCCTGCTGTCTCACAAGCTGCAGGCCTGAAACAATAGC
CCTTTGTACTGGAGCAGGGTCCACACCTCTCTGAAGGCTGCTTTTTCTTT
TGTTCTGGGCCTTTCCCTCTTGCCCACAGGGGGAGAAGGATACCCCCAGA
ATGCCATACCTGGCTGTGTGCTCCCCACTCACCTTGCAAAGTAGTAGGAC
TAAGTCTTTGTTCACAGGAAGCCTCAGATGACTGGCACAAGCAATGTGGG
TCTGCTGTGTTTACAATGGGGGCCCTTCCTGCTCCTGTTCCCCACTCCCC
TGCTTAACGGTCCT

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGGCAGGTGACATTTATAGGGCAT
GGGGGGCTGGAATCTGTTGTTGAGGAATTCCAGGTAGGTGGCCTTATCTT
GCTGTATCTCTAAGGACATTCCATTACAGAGGTGTGGGGGCTGGCTGGAA
ACTGGTGACCCATTGTCCTTGCTTCAGGCCAGGTGGTGGGGCAGTTTCTG
ACTCGCTGCTACCTGAAGCCTGGGTTTTTAGGCCTAATCTCCTGAACTGC
CCATTTGAAGCCTGTCATGGATTCATCCTGTCTCATCAGAAGGAAGGAGA
AGCTTACAGCAGGGGAGACAGTGGGGTGATGGAGGGGGGCTCCAGTTCTT
GCCTGTTAAGTCATCACCTGTGGCCACTATTCCCCCACCCCACCCCACCC
CCGCCCGCTGCCTGGTGCAGGTGGCCTGGTAGCTTGGAAGAGGCAGCTGG
CCTGGTAGCTTGGAAGAGGAGTGATCAATACCCCCATCCACCCCTTCTCC
CAGCCTCTCTCTCTCTCCCTCCTTCCCCTCCCCTCCCCTCCCCTCCCCTC
CCCTCTCTCTAGNCCCATGTGTTCCTGGCCAGCCTTTCTCTCTCTCTGCC
CTTTTCTGACTCCTCATTCTCTGCCTTACCATTTCTCCGAGACCTCACTC
CCTTGCGCCACAGTAAACTTCTCCTATATTCCGTCGGTCTTATGGTGAGG
ATTTCTCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_b14.b1 MSMg01no506_b14.b1 CHROMAT_FILE:
MSMg01no506_b14.b1 PHD_FILE: MSMg01no506_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:10 2005
         (572 letters)



>mm_chr10_60712456_60713428
          Length = 973

 Score = 1069 bits (553), Expect = 0.0
 Identities = 568/573 (99%), Gaps = 1/573 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttgtgaaataccatagtaagcggtctagcctactttatagagatgatgtggcttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tatttgtgaaataccatagtaagcggtctagcctactttatagagatgatgtggcttgta 840

                                                                       
Query: 61  tgtgcatgtgtgtgcctgcatgcgcgcacacatgtgtgtgcatgtgcatgtatgtttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tgtgcatgtgtgtgcctgcatgcgcgcacacatgtgtgtgcatgtgcatgtatgtttgtg 780

                                                                       
Query: 121 tgtgtgtctatatccatatgcaagcctatatattaacattatacatctcctcatgtttta 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 779 tgtgtgtctatatccatatgcaagcctatatagtaacattatacatctcctcatgtttta 720

                                                                       
Query: 181 ttggcctctttgattacagtctccgttgatggctaataacatttgatgggtttggccaag 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgacctctttgattacagtctccgttgatggctaataacatttgatgggtttggccaag 660

                                                                       
Query: 241 gttagatttttgtgttttgatttccaaggccaccttttgattttattttttttaaggact 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 659 gttagatttttgtgttttgatttccaaggccacctcttgattttattttttttaaggact 600

                                                                       
Query: 301 attttgatgtgggctgtatgggagcttgcaagtggagcctgcaccctcagtgcactagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 attttgatgtgggctgtatgggagcttgcaagtggagcctgcaccctcagtgcactagcc 540

                                                                       
Query: 361 tcgctaggtttctgaggggctgttagccccctgctgtctcacaagctgcaggcctgaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcgctaggtttctgaggggctgttagccccctgctgtctcacaagctgcaggcctgaaac 480

                                                                       
Query: 421 aatagccctttgtactggagcagggtccacacctctctgaaggctgctttttcttttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aatagccctttgtactggagcagggtccacacctctctgaaggctgctttttcttttgtt 420

                                                                       
Query: 481 ctgggcctttccctcttgcccacagggggagaaggataccccc-agaatgccatacctgg 539
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 419 ctgggcctttccctcttgcccacagcgggagaaggataccccccagaatgccatacctgg 360

                                            
Query: 540 ctgtgtgctccccactcaccttgcaaagtagta 572
           |||||||||||||||||||||||||||||||||
Sbjct: 359 ctgtgtgctccccactcaccttgcaaagtagta 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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