Query= MSMg01no506_n07.b1 MSMg01no506_n07.b1 CHROMAT_FILE:
MSMg01no506_n07.b1 PHD_FILE: MSMg01no506_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:09 2005
(633 letters)
>mm_chr10_65673920_65674952
Length = 1033
Score = 797 bits (412), Expect = 0.0
Identities = 421/424 (99%)
Strand = Plus / Minus
Query: 210 tttccagtttggtgatgcagctgtctttgagtcatttgggtcagtaacccctcacccata 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 tttccagtttggtgatgcagctgtctttgagtcatttgggtcagtaacccctcacccata 974
Query: 270 tttatgtaagtagcatcagtaaaataaattgattcaccaacttggatgttggtgacattc 329
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 973 tttatgtaagtagcatcagtaaaattaattgattcaccaacttggatgttggtgacattc 914
Query: 330 ataattatgtgtgttctggactcccaatctgaggtgaataggcatgtattgtcttgcctg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ataattatgtgtgttctggactcccaatctgaggtgaataggcatgtattgtcttgcctg 854
Query: 390 ggaaaactcttgtgacataaaacttttgatgtcatgactatggtacatgtgattttgtgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ggaaaactcttgtgacataaaacttttgatgtcatgactatggtacatgtgattttgtgt 794
Query: 450 gttatatgctacacaatctgttgaatatcttgcaaatcactcttggaaatgttttgtaca 509
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 793 gttatatgctacacaatctgttgaataccttgcaaatcactcttggaaatgttttgtaca 734
Query: 510 tatattacaaggatggaggcagtcaccctaagcagaggcatactcaataaatttttagtc 569
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 733 tatattacaaggatggaggcagtcaccctaagcagaggcatacgcaataaatttttagtc 674
Query: 570 agttgaaacacaaagtcattgatatcacccagtaaccattgggtattttaaatttctttg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agttgaaacacaaagtcattgatatcacccagtaaccattgggtattttaaatttctttg 614
Query: 630 aaag 633
||||
Sbjct: 613 aaag 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_n07.g1 MSMg01no506_n07.g1 CHROMAT_FILE:
MSMg01no506_n07.g1 PHD_FILE: MSMg01no506_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:09 2005
(548 letters)
>mm_chr10_65609520_65610468
Length = 949
Score = 978 bits (506), Expect = 0.0
Identities = 539/550 (98%), Gaps = 3/550 (0%)
Strand = Plus / Plus
Query: 1 tgactgattcatcttttgcacctaaaatcccctttgaggtttt-cccccaggggatgagg 59
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tgactgatttatcttttgcacctaaaatcccctttgaggtttttcccccaggggatgagg 260
Query: 60 tgggggtcaaaccttctaggatttgtcattttactttgcaacttgattgtattttttctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggggtcaaaccttctaggatttgtcattttactttgcaacttgattgtattttttctt 320
Query: 120 tcgccataatcatcaggcattcccacacccctctgtga-aactcacaatcatccaatgcc 178
| |||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 321 ttgccataatcaccaggcattcccacacccctctgt-ataactcacaatcatccaatgcc 379
Query: 179 ttctgaaatggaaataaaatatttaattttaccttccagattgatcactccaggatctcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttctgaaatggaaataaaatatttaattttaccttccagattgatcactccaggatctcc 439
Query: 239 cataaatattcttatttttgtgacaacatagtcattctcagacattcagtaggcagcagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cataaatattcttatttttgtgacaacatagtcattctcagacattcagtaggcagcagt 499
Query: 299 gtttctcaataacagcacatattagaaacattggtgatgtcaccaagatgtgatctaggc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtttctcaataacagcacatattagaaacattggtgatgtcaccaagatgtgatctaggc 559
Query: 359 tgttagaattagatataatcactttaatggttctgggcttaactctgcaaagtcaaggat 418
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct: 560 tgttagaattagatataatcactttaatggttctggggttaactatgcaaagtcaaggtt 619
Query: 419 taaaagaaaattgctactgtcttcaacagttttcagatttatcaatgaatgaggaaggtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaaagaaaattgctactgtcttcaacagttttcagatttatcaatgaatgaggaaggtt 679
Query: 479 gcttcctgtaaggcccaggaaactgataacattcatttacccaaaagtctgtgtggggaa 538
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 680 gcttcctgtaaggcccaggaaactgataacattcacttacccaaaagcctgtgtggggaa 739
Query: 539 tctgaaattg 548
||||||||||
Sbjct: 740 tctgaaattg 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space: 505182
Effective search space used: 505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
