BAC Information

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BAC

Clone NameMSMg01-507I02
Chromosome10 (Build37)
Map Location 68,204,799 - 68,205,412
singlet/doubletsinglet
Overlap geneTmem26
Upstream geneLOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507I02.T7 (MSMg01no507_i02.b1)MSMg01-507I02.TJ (MSMg01no507_i02.g1)
ACCAG581639AG581640
length759762
length of high quality
(start - end)
604 (73 - 676)345 (75 - 419)
definitionCHROMAT_FILE: MSMg01no507_i02.b1 PHD_FILE: MSMg01no507_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:04 2005CHROMAT_FILE: MSMg01no507_i02.g1 PHD_FILE: MSMg01no507_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATCCGCGG
AATTCTAAGAAGTATTCCATGAGTCTTGCTATGCTAAAGCCTTGTTCTGG
CATCATTTGAGAATATAGTTCTAAAAGCAAAACTGAAACTAGATTAAACA
ACACTTTTAGCTATTCCCACATGAATGCATTCAAACTTCTAGGGACCATT
GAAAACACAGGGCGATGGGGATTCCAGGAGACCAGCTTTTGGTGTTTGTT
GAGTTACAGTAAAACAGAAATCTTTGGGTTGGCGAGAAAGCTCACCAGCT
GTTAGGAGTTTCTGCTGCTCTTGCAGAGGACTAGATTTCAGATGCCAGCA
TCTGGGAACACCTGAACATCTGGGTATAACAAATCCCAGATCTCTAATGA
CCTCTTTGGACCTCAACAGGCACCAGCATGCAAGTGCACACACACACACA
CACACACACACACACATATACACACTTTAAAACAAAAATAAAATGGAACC
TTCCTTTAGAGCCCTGATATTAAGTGTAAGGAAGTTATATTATGAAGCCC
ATCACAGGGAAAGGGACCGCATATATCCAACTACATATGACCAATCCAAT
TGGCTTCCAATCCAATCCCATTTGGAATGCAGCTCCCATCATTCTGGTTG
GTTTGTTTTCTTGAGTCACAATGTAGCCTGGTATTTGCTATATACCCCAG
GCTGGCCCTGAACTTGTAGNAACCCTTCTGCTTCACCTCCCTGAAGTTAG
ACATTCCCC
NACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCAGGAAAGCTTGCTGTGTGAGCA
CCGAGACCTGAGTTCAATCCCTGAAACCCAACAAGCCAATCTGAAGAAGG
CTGGTGGTGCTTGCTTGTGCTTCCAGTGATGGGGAGGGTGAGACAGACAG
ATTCCTGGGGTTTAGCAGTCAGCCAGCTTTGCTGAATCAGTGACTCAGGG
CACTGGAGGATGCTGCCTTTCAACGGATGGTGGTGTCCAAGGCATGAACC
CTAATGTCATCCTTTGACCTTTATATACAGGTAGACACATATGCACTGAC
ACAGGCATGCACATAAACTCCCCCTACACATACAGAGAGGGGGGAAGGGA
GGAGGAGGAGGAGGAGGATNNNNCGNNNNTNTTNTTTTTNTTTTTNTTTT
TTTNTNTTTGGTATTTTTTTTTTNTTTTTNTTTTTTGTTGTGGGTTGGTT
GTGTGTTTTGTTTTGTTTGTGTGTGTTGTGTGGTGTGTTTTTTTGTTTNT
TTGGTTTGGTTTTTGTTTGTGTTTGTGTTTTGTTTGTTTTGTTTNGTTTG
GTTTGTTTTTTGTTTGTTGTTTTGTCTGTTGTTGTTTGTGTGTTGGGGGT
TTTGGGGTTTTTGTTTTNTTGTCTTTTGGTTTTTTTGTTGTTTTTGGTTT
TTTTTTTGTTTTGTTNGTTTGTTTTGGTTTTTTGTTTTTTGGTGTTTGGG
GGTTGTTNTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_i02.b1 MSMg01no507_i02.b1 CHROMAT_FILE:
MSMg01no507_i02.b1 PHD_FILE: MSMg01no507_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:04 2005
         (604 letters)



>mm_chr10_68204609_68205612
          Length = 1004

 Score = 1098 bits (568), Expect = 0.0
 Identities = 598/614 (97%), Gaps = 10/614 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcttgctatgctaaagccttgttctggcatcatttgagaatatagttctaaaagcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gtcttgctatgctaaagccttgttctggcatcatttgagaatatagttctaaaagcaaaa 250

                                                                       
Query: 61  ctgaaactagattaaacaacacttttagctattcccacatgaatgcattcaaacttctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgaaactagattaaacaacacttttagctattcccacatgaatgcattcaaacttctag 310

                                                                       
Query: 121 ggaccattgaaaacacagggcgatggggattccaggagaccagcttttggtgtttgttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggaccattgaaaacacagggcgatggggattccaggagaccagcttttggtgtttgttga 370

                                                                       
Query: 181 gttacagtaaaacagaaatctttgggttggcgagaaagctcaccagctgttaggagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gttacagtaaaacagaaatctttgggttggcgagaaagctcaccagctgttaggagtttc 430

                                                                       
Query: 241 tgctgctcttgcagaggactagatttcagatgccagcatctgggaacacctgaacatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgctgctcttgcagaggactagatttcagatgccagcatctgggaacacctgaacatctg 490

                                                                       
Query: 301 ggtataacaaatcccagatctctaatgacctctttggacctcaacaggcaccagcatgca 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 491 ggtataacaaatcccagatctctaatgacctctttggacctcaacatgcaccagcatgca 550

                                                                       
Query: 361 agtgcacacacacacacacacacacacacacacatatacacac----------tttaaaa 410
           |||||||||||||||||||||||||||||||||| | ||||||          |||||||
Sbjct: 551 agtgcacacacacacacacacacacacacacacacacacacacacacacacactttaaaa 610

                                                                       
Query: 411 caaaaataaaatggaaccttcctttagagccctgatattaagtgtaaggaagttatatta 470
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 611 caaaaataaaatggaaccttcctttagagccctgatattaaatgtaaggaagttatatta 670

                                                                       
Query: 471 tgaagcccatcacagggaaagggaccgcatatatccaactacatatgaccaatccaattg 530
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 671 tgaagcccatcacagggaaagggaccgcatatatccaaccacatatgaccaatccaattg 730

                                                                       
Query: 531 gcttccaatccaatcccatttggaatgcagctcccatcattctggttggtttgttttctt 590
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcttccaatccaatcccctttggaatgcagctcccatcattctggttggtttgttttctt 790

                         
Query: 591 gagtcacaatgtag 604
           ||||||||||||||
Sbjct: 791 gagtcacaatgtag 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)