BAC Information

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BAC

Clone NameMSMg01-507L17
Chromosome10 (Build37)
Map Location 72,636,585 - 72,637,178
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneLOC100040505, Zwint
Downstream geneLOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507L17.T7 (MSMg01no507_l17.b1)MSMg01-507L17.TJ (MSMg01no507_l17.g1)
ACCAG581811AG581812
length1,401764
length of high quality
(start - end)		---600 (76 - 675)
definitionCHROMAT_FILE: MSMg01no507_l17.b1 PHD_FILE: MSMg01no507_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:22 2005CHROMAT_FILE: MSMg01no507_l17.g1 PHD_FILE: MSMg01no507_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGTGGCGTGGGCTCTTCTCGTTGTAGGGGCAAGCAATATAGAAGCCTG
ACGCTCACTTCACAAAGACAGAGCGGGGGGCAGGAACGTGCGTGAGGTAG
TTCCTCTCCTACGAAGACGGTCACAGGAGGAGGAGGCGCACGAATACGAC
GCCGCGTAATCGTATTATGATAATTGTAAAGAGGGCGGAAGTGATCCACG
TACAACAACAGCAAGACATATACTATTATCACGGATGGCAGTACCCGGAT
GGAACACAGACGTGTGCGGGAATCGGGACGGGACGCGATCGAGGGAGAGC
AACCAACACCATATAGCGTGCATGACACGCTCGCGCACCTGAAGCGAGAG
GCGCGTAATGGGCGAGTGTCGCAGTGCGCCGACGGTCGAGCCCCCGTGTA
CGAGGCATCGCGGCCGCTGCGGTCACGCCGACCAGACCAAGAATCAACCC
GTGACGTGACGCGCCCCTGTCGCCCCCATCTGCGAGGCTAGGTCGCCGGT
GCGCACGGGGAGGATGTAGACGGGGGGTACACGCGATCCACATTTAAGCC
TCAAAAGAGAACGAGGATAGCGAGGTTCGGCGGACGGACGCAGACTTGAC
CCGAACGCGCGGATTGCGTTCCGTAGGGGGTGATCGCGAGACCGTCCTGG
AAGTAACCACTCGCCAGAGGAGTGACAAGCTCATACACGTCGACCGGAGG
CCGTCGAGCACATTGTTGTAATCGCGAGACCAAAGCGTACGTAGACGGAA
GGAGAGCACAGAGACATGTCGGATCACCATCATTCTTAAGTAGACGCCGA
ACCAATGCGCACACGCTCTATTGTCTGAATGCATCAGCACAACGTATCAT
CCGAGCGAACGTCGGAGGCATGGCGCGTAGGTGCCACGCCATATCTATAT
CATTGCCGCGAGTAGTAGTATGATCCGATCGCCGTCACAGTGCGAGGCAG
CGAGCGTAAATTGTGCTCCCCTCGGCGCAGTTAGCCTCACGGATCGAAAC
AGTCACAACATGATAATGGAAGAGACCGCGGCGCTGAGTCACGATGCGCA
CTCGCGGAGCACGACCGGGACGCACGCCNGTGATTCCCTCTACGACGCCC
CTACAATGACTCACTAGACATAACCGCCCCCCTATACGGTTCACAGCCAC
CACACACGACTGACCGCATCGAGACTGCATGTGTGTGTACGCGCTGCGCC
TCATTCATCGACTCGCTACGGCATNGATAGTACACGAATATACCATGTGT
GTCGCAACACTATACACGAGCTGACACGCTAGTGGCAATGAGCGTCTCGC
AGAGATTTTGAATACCTCGCGCCTATATCTCCGCTCACAGTCGTACAGGC
ATATGAGCACCACAAGCATGATCGTATATAACGACACGAATACAGACTCG
A

AACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGATATAGACACACTATTCTATGT
GAGCTATGATTTTGTTTTTCTTGTTTAAGCGCATTGCGACAAAACCCATA
TATCTATCTCATGGGTGTCTACACATTTTCCATGTCATTCTAAAGGTTTC
CTTCAAAGCCTGCCCAGTCCATCTACAGTTCAAATCCATCACTGAAACAT
TGTGCCTTGGCCACTGCTTTATTATTTTAGATAAGTTCAAAGGTATTTAT
TTCATTTTTGAATTATGTGTGCCTATGTTTGTGTGTGTACCTGTGTGTAT
GTGAACATGAGTGTAGGTGTCCATGAAAGGGCGGAGGTAGATGGAACCTG
GTACTCACTGGCTGTGGAGCCAGGCTCAACATCTAGCTAAGGAAGACACT
TGGCCTCAAGGCAGTAAGACAGAGACTAACGGAGCCGTGCAGCAAGTGCA
TTGTTCTGGTTCCTGACATTTAAGTGCGTGTTCATGTTTATCTGACCATT
CATGCACACACAACAAACATGCACGCACATGCACACACACACACACACAC
ACACACACACACACACACGTACACTTAATCAATGGTGCTCAAATCACAAA
TTGAGTTACGCAGGAAATTGAAATGATGTCCCACTGGACTGACTGACTAA
ATGATACCAGAAGCATTGAATATTAAGTTAAGGTGCCTGTAGCTCAAGCT
TCCATTTACTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_l17.g1 MSMg01no507_l17.g1 CHROMAT_FILE:
MSMg01no507_l17.g1 PHD_FILE: MSMg01no507_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:22 2005
         (600 letters)



>mm_chr10_72636385_72637384
          Length = 1000

 Score = 1052 bits (544), Expect = 0.0
 Identities = 584/600 (97%), Gaps = 6/600 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatatagacacactattctatgtgagctatgattttgtttttcttgtttaagcgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatatagacacactattctatgtgagctatgattttgtttttcttgtttaagcgcatt 260

                                                                       
Query: 61  gcgacaaaacccatatatctatctcatgggtgtctacacattttccatgtcattctaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gcgacaaaacccatatatctatctcatgggtgtctacacattttccatgtcattccaaag 320

                                                                       
Query: 121 gtttccttcaaagcctgcccagtccatctacagttcaaatccatcactgaaacattgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttccttcaaagcctgcccagtccatctacagttcaaatccatcactgaaacattgtgc 380

                                                                       
Query: 181 cttggccactgctttattattttagataagttcaaaggtatttatttcatttttgaatta 240
           ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cttggccactgatttattaatttagataagttcaaaggtatttatttcagttttgaatta 440

                                                                       
Query: 241 tgtgtgcctatgtttgtgtgtgtacctgtgtgtatgtgaacatgagtgtaggtgtccatg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgcccatgtttgtgtgtgtacctgtgtgtatgtgaacatgagtgtaggtgtccatg 500

                                                                       
Query: 301 aaagggcggaggtagatggaacctggtactcactggctgtggagccaggctcaacatcta 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagggcagaggtagatggaacctggtactcactggctgtggagccaggctcaacatcta 560

                                                                       
Query: 361 gctaaggaagacacttggcctcaaggcagtaagacagagactaacggagccgtgcagcaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 561 gctaaggaagacacttggcctcaaggcagtaagacagagactaacggagatgtgcagcaa 620

                                                                       
Query: 421 gtgcattgttctggttcctgacatttaagtgcgtgttcatgtttatctgaccattcatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcattgttctggttcctgacatttaagtgcgtgttcatgtttatctgaccattcatgc 680

                                                                       
Query: 481 acacacaacaaacatgcacgcacatgcacacacacacacacacacacacacacacacaca 540
           |||||||||||||||||||  |||    ||| ||||||||||||||||||||||||||||
Sbjct: 681 acacacaacaaacatgcac--aca----cacgcacacacacacacacacacacacacaca 734

                                                                       
Query: 541 cacgtacacttaatcaatggtgctcaaatcacaaattgagttacgcaggaaattgaaatg 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 735 cacgtacacttaatcaatggtgctcaaatcacaaattgagttacacaggaaattgaaatg 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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