BAC Information

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BAC

Clone NameMSMg01-508L19
Chromosome10 (Build37)
Map Location 45,429,199 - 45,580,687
singlet/doubletdoublet
Overlap geneHace1
Upstream gene4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364
Downstream geneLOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508L19.T7 (MSMg01no508_l19.b1)MSMg01-508L19.TJ (MSMg01no508_l19.g1)
ACCAG582579AG582580
length759776
length of high quality
(start - end)		657 (78 - 734)527 (80 - 606)
definitionCHROMAT_FILE: MSMg01no508_l19.b1 PHD_FILE: MSMg01no508_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:45 2005CHROMAT_FILE: MSMg01no508_l19.g1 PHD_FILE: MSMg01no508_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,580,031 - 45,580,687)(45,429,199 - 45,429,725)
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGC
GCGGAATTCATCCCACTTTCCAAATGGCTCGCTCTGAAGCAAATTGCTTT
CAGATGAGATTTTCCCTCAAAGCTTTTCATCCTACGGCCCTTCTATTTCT
TTTAATAATTCTAAACATGAATGATAATTATTAAGTGACTATTTCCCGAG
CTGGTTTCTACATTACACGTGGCATAGCACAAAATGAGATGTGGTTTGAA
TGCATTTGGGGGAATAACTATTCGGAGGAAAAGAGGCTGAGAGAAAATGT
AAGAATTTTTTAATGAAACAATTGTCTTCTGTTGGTAGTGCATAATCCCC
CACCCCCACCCCCTGGGATCCCATGTATTCCTAATTTTCTAGAAAAATAA
ACCTTATTGCTGCAATAAAAATGTAATTTAAAAATTATACATGAACAAGA
AAATCATTAGTAATCTAGCTTTTGTTTCTACACAGCTCTTTGAAGAAACA
ACTTGCCATCCAGCTAAGAAAACTCTCTTTGAACCACACAGACATTAAGT
GTACTTTTACGAGACCCTCCTGAGTGTTATGGCTGACCGCTAATCCAGAA
CAATAAAGAAAAGCAGGCATTCTTTCTTTAACAGAGGAAAACATTTTTCT
TTAATTTAAAAGAAATAATAAAATGGGCTTTAGACTACACTTGAATCCTA
GCTCAAATACTTCTGCAAATTAGTTCATCTCTGTGAGCCCTGGTTTTCCA
CATGTAAAA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCAGGAACCTAGAGACAA
GAGCGAATGCAGAGGCCACAGAGGAACACTACTTGCTTAGCCTGCTTTCA
TACAGCACCCAGTACCTCCAGCCACTTCCCACAGTACTGTGCTGGATCCT
CCCACATCAATCGTCAGTCAAGAAAATGCACCACAGGCTTACTACAGGCC
AGTATGGTGGTCTCAAGATTCTTCTTTCCAAAAAACCAGCTGTGTCAAGT
TGACACAAAACTAGCCAGCACATTGTAAACACATCATGTGGCCAGTTAAA
AGTATTGCTAGCTGAGGAAGCACAGAGAGGTTTCTCCTGGGAAGCTTGCT
AACTGAACATGAAGCAACAGACAAGAATGAGTTGGGAGGTTCAGACTCAA
AAATGCCCTTCTGTCGTTTTAGAGTTGAATATATTTTTATCCTAACTTAG
AACTTAAAATGTGTCTGTCAGACTGAGATTTTCTTTCCTGATCACAGCTG
ATGATACAAACTCTTAGTTCCAGGGTCCCGCATGGTGGCTTTGCCAATAT
TATGGGTGGAAGTGGTTTGCAAAACTTTACAATTGCTGCTGTGCCATATA
CTCCAAATCTTTTACCAACTTCCAGCACATGGTAAGTTAAACTAGCTTTA
TCTAATGAATTATAGAATATTTTTATTCATTTTAAATCATCAGAAGGAAT
GCTATATTCCCTTTTGATAGTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_l19.b1 MSMg01no508_l19.b1 CHROMAT_FILE:
MSMg01no508_l19.b1 PHD_FILE: MSMg01no508_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:45 2005
         (657 letters)



>mm_chr10_45579831_45580887
          Length = 1057

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgctctgaagcaaattgctttcagatgagattttccctcaaagcttttcatcctacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctcgctctgaagcaaattgctttcagatgagattttccctcaaagcttttcatcctacgg 798

                                                                       
Query: 61  cccttctatttcttttaataattctaaacatgaatgataattattaagtgactatttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cccttctatttcttttaataattctaaacatgaatgataattattaagtgactatttccc 738

                                                                       
Query: 121 gagctggtttctacattacacgtggcatagcacaaaatgagatgtggtttgaatgcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gagctggtttctacattacacgtggcatagcacaaaatgagatgtggtttgaatgcattt 678

                                                                       
Query: 181 gggggaataactattcggaggaaaagaggctgagagaaaatgtaagaattttttaatgaa 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gggggaataactattcagaggaaaagaggctgagagaaaatgtaagaattttttaatgaa 618

                                                                       
Query: 241 acaattgtcttctgttggtagtgcataatcccccacccccaccccctgggatcccatgta 300
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acaattgtcttcgggtggtagtgcataatcccccacccccaccccctgggatcccatgta 558

                                                                       
Query: 301 ttcctaattttctagaaaaataaaccttattgctgcaataaaaatgtaatttaaaaatta 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttcctaattttctagaaaaacaaaccttattgctgcaataaaaatgtaatttaaaaatta 498

                                                                       
Query: 361 tacatgaacaagaaaatcattagtaatctagcttttgtttctacacagctctttgaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacatgaacaagaaaatcattagtaatctagcttttgtttctacacagctctttgaagaa 438

                                                                       
Query: 421 acaacttgccatccagctaagaaaactctctttgaaccacacagacattaagtgtacttt 480
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acaacttaccatctagctaagaaaactctctttgaaccacacagacattaagtgtacttt 378

                                                                       
Query: 481 tacgagaccctcctgagtgttatggctgaccgctaatccagaacaataaagaaaagcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tacgagaccctcctgagtgttatggctgaccgctaatccagaacaataaagaaaagcagg 318

                                                                       
Query: 541 cattctttctttaacagaggaaaacatttttctttaatttaaaagaaataataaaatggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cattctttctttaacagaggaaaacatttttctttaatttaaaagaaataataaaatggg 258

                                                                    
Query: 601 ctttagactacacttgaatcctagctcaaatacttctgcaaattagttcatctctgt 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctttagactacacttgaatcctagctcaaatacttctgcaaattagttcatctctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no508_l19.g1 MSMg01no508_l19.g1 CHROMAT_FILE:
MSMg01no508_l19.g1 PHD_FILE: MSMg01no508_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:45 2005
         (527 letters)



>mm_chr10_45428999_45429925
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcaggaacctagagacaagagcgaatgcagaggccacagaggaacactacttgctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcaggaacctagagacaagagcgaatgcagaggccacagaggaacactacttgctta 260

                                                                       
Query: 61  gcctgctttcatacagcacccagtacctccagccacttcccacagtactgtgctggatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gcctgctttcatacagcacccagtacctccagccacttcccacagtactgtgctggaccc 320

                                                                       
Query: 121 tcccacatcaatcgtcagtcaagaaaatgcaccacaggcttactacaggccagtatggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccacatcaatcgtcagtcaagaaaatgcaccacaggcttactacaggccagtatggtg 380

                                                                       
Query: 181 gtctcaagattcttctttccaaaaaaccagctgtgtcaagttgacacaaaactagccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gtctcaagattcttctttccaaaaaaccagctgtgtcaagttgacacaagactagccagc 440

                                                                       
Query: 241 acattgtaaacacatcatgtggccagttaaaagtattgctagctgaggaagcacagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattgtaaacacatcatgtggccagttaaaagtattgctagctgaggaagcacagagag 500

                                                                       
Query: 301 gtttctcctgggaagcttgctaactgaacatgaagcaacagacaagaatgagttgggagg 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtttctcctgggaagcttgctaactgaacatgaagcaacagacaggaatgagttgggagg 560

                                                                       
Query: 361 ttcagactcaaaaatgcccttctgtcgttttagagttgaatatatttttatcctaactta 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagactcagaaatgcccttctgtcgttttagagttgaatatatttttatcctaactta 620

                                                                       
Query: 421 gaacttaaaatgtgtctgtcagactgagattttctttcctgatcacagctgatgatacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacttaaaatgtgtctgtcagactgagattttctttcctgatcacagctgatgatacaa 680

                                                          
Query: 481 actcttagttccagggtcccgcatggtggctttgccaatattatggg 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actcttagttccagggtcccgcatggtggctttgccaatattatggg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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