BAC Information

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BAC

Clone NameMSMg01-509L11
Chromosome10 (Build37)
Map Location 46,202,599 - 46,203,237
singlet/doubletsinglet
Overlap genenone
Upstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
Downstream geneLOC100041632, LOC668252, LOC100042387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509L11.T7 (MSMg01no509_l11.b1)MSMg01-509L11.TJ (MSMg01no509_l11.g1)
ACCAG583327AG583328
length744741
length of high quality
(start - end)
371 (322 - 692)639 (82 - 720)
definitionCHROMAT_FILE: MSMg01no509_l11.b1 PHD_FILE: MSMg01no509_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:02 2005CHROMAT_FILE: MSMg01no509_l11.g1 PHD_FILE: MSMg01no509_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATAATTTGCGGTCGCNAAACGAATCACATTCAAAATAGGATCCGC
GGAATTCCTTCTTACATAAATGTGAAAATTGTGTTGGAATTTCAATGGAA
ATTTCATTGAATCTGTATATTGCTTTTGGTAAGATGGCCATTCTTACTAT
GTTAATCCAACTGATCCATGAACATGGGAGATCTTTCCATCTTCTTGTAT
CTTCTTCAATTTCTTTCTTCAGAAAATTAGACTTCTTCTCATACAAGTCT
GACACTTGCTTGCTTAGAGTTACACCAAGATATTTTATATTATTTGTGGC
TATTGTAAAGGTATTTTTCNATTTTCTTTCTTGGTCTATTTCATCATCAA
AATGGTTGAAATCAAGAAACATTCTAGCAAGCAAGTAGAAAACTCATACA
TTGCTGTTGGGAATGCATAATTTTACAGACACTATGGGAACCAGCACAGC
ACATCTTCAGGAAGATGAGAATATATTTACCTCAACATATATCTTTTCTA
TCTTTGAACATCTATCTCTTCTATCTTTGACAGATACCCAAATGATGCTT
CATCTTACCTGAGAGATACTTGTTCAACCATATTCATTGCAGCTCTACTT
ATAATAGCCAGAAATTGGAAAAACCTAGGTTATCCCTGAACAGAAAAATG
AATGAGAAAAAATATGAAACATTTACACAATGACGTTTTAGTCAGATGTT
GAGAAAAATATCACAAAATTTTCAGGTTAGTAGATTTAATTCAA
CCCGATGATAGGGGGTAGGNGGGAGGCCGCCGTCAAATCCAGGTTAGGNG
ACCNANAGATCCCTCAAAGGAGTTCATTGNNGAAAGAAGGTTGTAGATCT
GTAGTTTGAATGACTCTACACTCAAAGTGTTTCCTCATCAGCTTGGTATG
GCTTATATATGGTTCTATAAAACATATAGAGAGGAAATGAAAGGCGTGGC
TACATTCTTAGTACCTACAAATGGACTAGACAGAGATCATTTTGTTTCTA
TGAAAATAATATTAAATATTATTTATTTAATAAAATATTAGACTAAGCAT
AGTAAAATGGTTTTTATTGTTTATCACTTAATACCTTATCATTTAATGTA
AAATATTTACATATGCTATATACACAGAAATTTATGTTTTATGTATGAAC
ATATGGAAATTACGATGATAAAATCACAAATAATACTGCTCTAGGAAAAC
ACTGAGATACTGTGCAATGTTTCTTGACCTTGCAGATGCAACATTCCAAC
ACCTAAAATCCAATAAAGGCACTTTATTACCAAAATTAGCATGATAAAAT
TGATGTATGCCATTCTGAAATGTTCCCCTAAGGGATCCTGCCTGCCCTGT
TTTCTCTCCTCTCTTTGCACATGTGTTCTCCTCCCTTGGAATTTTTGAGC
GAATGCTTAGCAAAGAGTTGATGGCTGTTCTCCTAGCTCATCTAGGTGTG
GACTGTGACTCTATCTCTTGATTTAGTCAGCAAGAATAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_l11.g1 MSMg01no509_l11.g1 CHROMAT_FILE:
MSMg01no509_l11.g1 PHD_FILE: MSMg01no509_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:02 2005
         (639 letters)



>mm_chr10_46202399_46203437
          Length = 1039

 Score = 1201 bits (621), Expect = 0.0
 Identities = 635/641 (99%), Gaps = 4/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagaaggttgtagatctgtagtttgaatgactctacactcaaagtgtttcctcatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagaaggttgtagatctgtagtttgaatgactctacactcaaagtgtttcctcatcag 260

                                                                       
Query: 61  cttggtatggcttatatatggttctataaaacatatagagaggaaatgaaaggcgtggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggtatggcttatatatggttctataaaacatatagagaggaaatgaaaggcgtggct 320

                                                                       
Query: 121 acattcttagtacctacaaatggactagacagagatcattttgtttctatgaaaataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattcttagtacctacaaatggactagacagagatcattttgtttctatgaaaataata 380

                                                                       
Query: 181 ttaaatattatttatttaataaaatattagactaagcatagtaaaatggtttt--tattg 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| 
Sbjct: 381 ttaaatattatttatttaataaaatattagactaagcatagtaaaatggttttaatatt- 439

                                                                       
Query: 239 tttatcacttaataccttatcatttaatgtaaaatatttacatatgctatatacacagaa 298
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 -ttatcacttaatacgttatcatttaatgtaaaatatttacatatgctatatacacagaa 498

                                                                       
Query: 299 atttatgttttatgtatgaacatatggaaattacgatgataaaatcacaaataatactgc 358
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 atttatgttttatgtatgaacatatggaaattaggatgataaaatcacaaataatactgc 558

                                                                       
Query: 359 tctaggaaaacactgagatactgtgcaatgtttcttgaccttgcagatgcaacattccaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctaggaaaacactgagatactgtgcaatgtttcttgaccttgcagatgcaacattccaa 618

                                                                       
Query: 419 cacctaaaatccaataaaggcactttattaccaaaattagcatgataaaattgatgtatg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cacctaaaatccaataaaggcactttattaccaaaattagcatgataaaattgatgtatg 678

                                                                       
Query: 479 ccattctgaaatgttcccctaagggatcctgcctgccctgttttctctcctctctttgca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccattctgaaatgttcccctaagggatcctgcctgccctgttttctctcctctctttgca 738

                                                                       
Query: 539 catgtgttctcctcccttggaatttttgagcgaatgcttagcaaagagttgatggctgtt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 catgtgttctcctcccttggaatttttgagcgaatgcttagcaaagagttgatggctgtt 798

                                                    
Query: 599 ctcctagctcatctaggtgtggactgtgactctatctcttg 639
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctcctagctcatctaggtgtggactgtgactctatctcttg 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)