BAC Information

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BAC

Clone NameMSMg01-509M11
Chromosome10 (Build37)
Map Location 119,746,600 - 119,746,831
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik
Downstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M11.T7 (MSMg01no509_m11.b1)MSMg01-509M11.TJ (MSMg01no509_m11.g1)
ACCAG583374AG583375
length7421,579
length of high quality
(start - end)
231 (83 - 313)---
definitionCHROMAT_FILE: MSMg01no509_m11.b1 PHD_FILE: MSMg01no509_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:08 2005CHROMAT_FILE: MSMg01no509_m11.g1 PHD_FILE: MSMg01no509_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACTAAAATTTGCGGCCGCNAAAAGAANCACATTCCGTACTGGATCCGC
GGAATTCCCTTTGGCATCATCGCTGGTTTTGNCTTCTGCACTATCCTCTT
CTCCCGTCCATTATCTGCACCACGACCCACTCCCCTACCCCACCCTCATG
TAGCTTTGGCTACAAATCAGAACAGCTCTCCGGGGCTAGAACCACATTGC
AACCCTCCTGTGTTTCCTAAGGATTTTCCTTCGTTCCCCAGATTTTTTTT
TCCTGGCTTCCTCCAGGTGGGGTTCTGACCACAGAAACTGAAGCTAGCCC
CCACCCCAACTGTTTTATTTTANNGAAGNANGGNACGANAGNCNNACAAA
GGNCATTTTCNCCCCACNGNAAANCAAGGGACAGCGGNCNNNGGAANAAA
NNCCAAANAGNCGGNCCCGGAACTGAAANNGGCAGNGGGNCCCNCCNCCA
NCCNGGCNGACANCNCCCCANNCANGGCNNNNCNGCCNNCANCCANNCAN
GGNNNGANGAGNCNANAAANACANCNCANCGGCNNCNACNNNGCNNNNNA
AGAANAAACGGANACCAAACACGCGGCNNNAAANACANCCACAGGCAAAG
CACAACAAGNNAAAGCGGCGGCACAACACAGNNNCAGAACATTTTTTTGC
TCATTATGCCAGCTGTGATAGAACTGGGTAATGAAAAAAAATCTTAATTC
AAATGTATAAATGAAGAATCCATCACGAAAGACACTTTTAAN
TCTCTCTAATAACTTATCTCGGCGACTCNGCGCGCCGTGGNGCGCGCGTG
AGGTGTGCCTCTACCTACTATCANCGCGTGTAGTGCTACGAGATAGTGAA
TGCGAGATATTCGCCTCAATGTGAGCCACTTACATACTATACCTAATATC
GTATGACCTCTTGTGTCTCTGACTAGTGTGCTGCNCATCTCTATATATAT
TGATACTATATGATGAGTATATTGACAGACCGCGATGGTGATCGCGTGCT
TCGAGGCGCGGTCGTGTCGAGGGGTGATGATGCCGCGTGACGTGTTCTCC
ATTATTCGTCTGTGTGATACTGACGCTTGTCGTGCACTGTGATGCTGCCT
ANGTGCTGTAGTATTGCCTTATCAGCGACCNCTTATGATGTATCACAGCT
ATTAGTACTTAATACTACACCGGCAGTAGATGCATGACTATAATAATACG
TGTGCGAGCTTATTATCTAAGATTAATGTATCTTTCGATTATTCAGCTGC
GATGTGCGTTACGTCAATACCTTACACTCATGAGCGCTANAATGTCCGAC
CTCGTTANTCCCGCGCTCCTCCTCATATATATCCACGCCAGCGTACACAA
GCTCTAATTTGTTCTGCCTATTGATGCTGCGCATGTGTGCCGCGCAGCGC
CAGAGGTGAGTTGACGCCGATACGGCCGTGCGAGAAGATCGATCGTATTA
TTGAATTACGCGTATATTGAGGCGCATACTNCGCACACACAACGACATAA
CTCTACGACCTTGCGTTCCCCGGTTCTCGCCATTCCGTGCGTGTTGTGAC
CGCGCTACGGCAGTACGAACGGTTGTCTCATGCCCGCTTCCCCGCTGTGC
GGCTGTCTGTTTACCTTATCCGCCTATTACCGCGTGATCGCGTTATTAAC
TATGACACGGCATGATATCCCGTATTACGACATACTCGTCGTGGCGTACG
CGCGCGGCACTCTCGCACTATATCATACNAGTTGATAGTAGTCGTATTGT
CAGATACTGCCAGCCGTCTTGGCTTACCTTGTTACCGCGGGCATGCGCTC
CGACCGTCGCGGCCTTTATTACTCGTCAGCGCTTATATGCTCTCGCGCGC
CGATGTCGTATCGCACGACGCGCGCGTGTCTCGGGCCGTGTGGCACGACG
ATCGCGCTATCTCGCTATACCGTACGAGCGCGACGAGGCGCAGCTTATGA
TATACACGCACGCTACAGCCACAATTCGCAGTGCATCAGTCCCNGCCGAT
AGTGTTCGTCCAGCGCGCGCGCCCAGCGTTACGTCTCTGTTTACGATTAT
ACAGATCGATCNCNAGCATTGATTATGCGGTCGCGATGCTGCGGGCGCAC
TAGNCGCNCGATGCTCGTCTGTGTGATACTGAACGCTACACGCGCTNGTA
CAGCTCGGCACACATAAATACATATATAACGCTGAGTCTAGTGAGCGCTG
TTGACGCCACGCATATCTGTATATTTTGATCTGTATGCAGTGCTGCCGAG
TATGCGCGCCCACCCACACATCCACTGTCTCATCATATCTCATCTACTAT
TATAGTCGCTGACCACTCGCGCACGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m11.b1 MSMg01no509_m11.b1 CHROMAT_FILE:
MSMg01no509_m11.b1 PHD_FILE: MSMg01no509_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:08 2005
         (231 letters)



>mm_chr10_119746400_119747031
          Length = 632

 Score =  402 bits (208), Expect = e-117
 Identities = 226/232 (97%), Gaps = 1/232 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgcactatcctcttctcccgtccattatctgcaccacgacccactcccctacccca 60
           |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct: 432 cttctgcactatcctcttctcccgtccattttctgcaccatgacccactcccctccccca 373

                                                                       
Query: 61  ccctcatgtagctttggctacaaatcagaacagctctccggggctagaaccacattgcaa 120
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 372 ccctcatgtagctttggctacaaatcagaatagctctcgggggctagaaccacattgcaa 313

                                                                       
Query: 121 ccctcctgtgtttcctaaggattttccttcgttccccaga-tttttttttcctggcttcc 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 312 ccctcctgtgtttcctaaggattttccttcgttccccagattttttttttcctggcttcc 253

                                                               
Query: 180 tccaggtggggttctgaccacagaaactgaagctagcccccaccccaactgt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tccaggtggggttctgaccacagaaactgaagctagcccccaccccaactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 632
Length adjustment: 9
Effective length of query: 222
Effective length of database: 623
Effective search space:   138306
Effective search space used:   138306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)