BAC Information

Click to search

BAC

Clone NameMSMg01-510E16
Chromosome10 (Build37)
Map Location 88,898,521 - 88,898,845
singlet/doubletsinglet
Overlap geneGas2l3
Upstream geneGnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
Downstream geneNr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510E16.T7 (MSMg01no510_e16.b1)MSMg01-510E16.TJ (MSMg01no510_e16.g1)
ACCAG583763AG583764
length1,548743
length of high quality
(start - end)
---326 (326 - 651)
definitionCHROMAT_FILE: MSMg01no510_e16.b1 PHD_FILE: MSMg01no510_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:50 2005CHROMAT_FILE: MSMg01no510_e16.g1 PHD_FILE: MSMg01no510_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCGCGGTCGGTTGTATATGCCCTTCNCTAGTAGGGGAAGCAAGCGAA
ACTTCTTCCCATATAAAGAGCAAGAGGGGGGTGGCCGCGTGTCGTGTTCT
TCTCTTCTTACTTTCGTTCTGGGTGCGTGCGCGGCGACATTATGCGTATG
CCTACCGCCTTCCTATATTTGTTCTATTGCGCCGCGCTAGACCGCGTACC
CTTGTCTCTCTACGCGTCTATATTCTATGCCCCAATACATGCTTCTTTTA
TCATAATCTCACCACTTTACCCTTCTTCTGTCCACCTGCGCGCCCTCTCT
TCGTCGCCATATGCGCCGCGCGCGCCGACATTCTTATCTATCTATACNCT
CGTTCTCATCATCACTCTTCTTTACGCTCTTTAATTTAGATGCGCTCGGC
AGAGGTCTTCACTCACNTTCTTTGGGATACTAGCCTGTTACCGTTTTATC
TACATTTATGTTTTGCGCAGGCAATAGTGATGACATGGGTTGAGNATGTT
GTGAGAGTGCACAGTAGCTCTTTGAGTGCTTGATGAGTCGTACGCTGAGC
CACTATGGTAACCGGGCGTGGAGAGTAGTGTGCTATGGTATCACTGTTCC
ACCTATGAGCTGGACGCTATCATGTGTACCNAGTTTCGGGTCACTTCGTC
GCATTGCAATACAGATAGTTGGTGTATAGGGCGACTGAGTGGTTGAAGTA
CACATATAATGAAGCGGTATAGATATACAATGATAAATATACGACAGTTT
GTAGAACGTACTAACACAAGTGGGATAAGAGCAAAGTGATCTATACAACA
TTACAACTTATTAGAGATACGGACATTAGGTGAAATTGGATGTACCAGTG
ACACAATATTCCTTACACGTTATATAGAACGACATTGTATATTATTATGA
TTTCGTGTTGGGTCGGAATACATAANTAGAGGTGCGCGAATCAGTACACA
CAATGTGACAGAAGTGTTGTTACACACAGCGGAACCGACATAGATTCGTC
TGTGCTCACCGATGAGATGCACCAGTTATAGTTACTCGATACATCGCGAC
CGTATCTAAACTGCTCATGTGTATAAATATCTATAGAACAGTATACCAAG
TCAGTTGTAGTGATCTCTTATTGAATACTCGTTCAATCGTATATCTTACA
CACAACAAATAGTATCAAGACACCAGCACGACGTAACGCGACACATACAT
AAGATAATTAAATACGGCAAGTAAGATAAGGTACGGTGGCGCCGTAAGAA
CGCCCGCGCGTTAATTCTATATATACGCCGCGCGCAAGTGTCGTGTATGT
AGAATGACCGCGGCGGGATTGCACACANCATTACAAAAANCTGAGCGCTA
CGAGAAANTCGCGCGCCGCGAGACGAGAACTAGAGAACATAGTATCAGGN
GCAATGAGTGCGATGAAATGCGCCCGAGCGTGCACGCAAGATAGAAGTGT
GCAAATCAGTTATGTCGCTATGTGATGTGTCGCTCACACAACGCTGCTTG
AGTGAGACTCANGATACATACCCGATATGACACTCACTGCCTCGGGCG
ACGATGATGTGNGAGGCCTGGNNGGCGNCTGGCCTACAAAACTGGGTGAA
CNATAGAAGGATCCCAAGAAAACGCTATTCNTGAACTATTATCTTAGAGA
AGCACATCAAAATGGCGAAGCATCTTTGATGCACACTGCAGGCCTACAGA
CTAGTAGACGCCTCTGTTCTTACTGCAGTTTCGGCTTGGCACCCGGCCCG
CTCCTTGCAGCTTATATGAACTGGCAGTCATCTGGAGGCTCGGTGCTATG
TAGTAGTAGTCTTCCTCCTGCCCCCTTTCCTGGAAGAAACTTACCTTCCT
TGTTTGCCATTTAGGTTTTTTCNCCCGGTTTAAATCTGGATTGTGTCATT
GGACTTTAAGTCCTTCACGTCACGTTTTATAATGTGGGGGTGGGGAATAC
AGCATACTGTGTGGCTCAGAGCCTGCAGCCCTGGGCAGGAATGCTCTATA
GAATGGCTTTCTCTTTTTTGTGATCTGAGGTCAGCTTTCAAGGAGAACCT
TAAGGAAAATACAACCCCCAAATAACCACTTCATTAAGAGTGGATTGGGC
TCAGTCCTGGGCAAGCTGCAGGGGGAGGAATAACCAAAAATCCCTATTAA
GGCTGGTAAAGAATGAAGGCAGCTTCCCCAGTAAGACAGAGGGAGAAAGA
AAGAAGCCAAGTGAGGTGTACCCCCAGGGATGACGTGCCCCCACCCCCCA
GGAGTGATTGATGTACTGCTGGTTCAGATTGAGGCTGAGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_e16.g1 MSMg01no510_e16.g1 CHROMAT_FILE:
MSMg01no510_e16.g1 PHD_FILE: MSMg01no510_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:50 2005
         (326 letters)



>mm_chr10_88898321_88899045
          Length = 725

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%), Gaps = 1/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggtttaaatctggattgtgtcattggactttaagtccttcacgtcacgttttataatgt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 525 cggtttaaatctggattgtgtcatgggactttaagtccttcacgtcacgttttataatgt 466

                                                                       
Query: 61  gggggtggggaatacagcatactgtgtggctcagagcctgcagccctgggcaggaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggggtggggaatacagcatactgtgtggctcagagcctgcagccctgggcaggaatgct 406

                                                                       
Query: 121 ctatagaatggctttctcttttttgtgatctgaggtcagctttcaaggagaaccttaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctatagaatggctttctcttttttgtgatctgaggtcagctttcaaggagaaccttaagg 346

                                                                       
Query: 181 aaaatacaacccccaaataaccacttcattaagagtggattgggctcagtcctgggcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaaatacaacccccaaataaccacttcattaagagtggattgggctcagtcctgggcaag 286

                                                                       
Query: 241 ctgcagggggaggaataaccaaaaatccctattaaggctggtaaagaatgaaggcagctt 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 285 ctgcagggggaggaataaccaaaaa-ccctattaaggctggtaaagaatgaaggcagctt 227

                                     
Query: 301 ccccagtaagacagagggagaaagaa 326
           ||||||||||||||||||||||||||
Sbjct: 226 ccccagtaagacagagggagaaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space:   226972
Effective search space used:   226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)