BAC Information

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BAC

Clone NameMSMg01-510H19
Chromosome10 (Build37)
Map Location 102,233,930 - 102,234,621
singlet/doubletsinglet
Overlap geneLOC382413
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510H19.T7 (MSMg01no510_h19.b1)MSMg01-510H19.TJ (MSMg01no510_h19.g1)
ACCAG583912AG583913
length765767
length of high quality
(start - end)
692 (74 - 765)630 (76 - 705)
definitionCHROMAT_FILE: MSMg01no510_h19.b1 PHD_FILE: MSMg01no510_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:05 2005CHROMAT_FILE: MSMg01no510_h19.g1 PHD_FILE: MSMg01no510_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAAATGCGCGGA
ATTCCATTGGCTTTCCATTGATAAGCCAATACTTAAGCTTTTAGGGTTTG
CTAGGGCAATACCCCACTTTGAGTGCCAAATTCTATTACTGAACAGTATC
CCAAATATCAGTGATGTACAAAAAAAATGTCATTCTCAAAGTTTTAATTC
AAGAATGTAAATAGGACTCAGAAGGGAAGTTTCTTTCTACTGTATAATAT
TTGGAGCATCATTTTAGATGATCCAAGTGATTCAAAGAGACTTGAAAGGC
TGGGCACTTGGATTGCTGAGATTCTTCTCTGGCTGTGCATCTGCCATAAA
GGTTGAATTGGCTCAAAGTCTGAGCTTTACAAGACTGAAAATAAGAGAGT
TTTCCTGTGGAATCTCTCAGTGTTAGGGGGGTAGAATCAAAAGTCAGATT
AATGAAACATGCAGAATTTTGTGTATTGCGCATAATCTGTCATGGAGTTT
ACAGCTTACTTCATGAATAATGTAATAACGCTCATAATGGTTTTTTGGTT
ATTATTCTAGCAATTTTGCATTCTATTTATTTATTTGGAATTTTATGCAA
TAAGAAAGAAGTGAGATGATTCTGTTGGCAGAAATGTATATGTCACTATT
ACAAGGTTTTTTTTTTAACATTTCTTGCATAGTCTCAAATTTGTTGCTGT
ACTTTGAAAATAATAAACTTTATCTAACTGGAAAAATATGAATGCTATTT
AGGTAATCATATTAN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCAACTGAAAAGCTTCTGAGGTC
AAAGGACATCATCAACAGGACAAAATGACAGCCTACAGATTAGGAAAGTA
TCTTTACCAAACCTCCATCTGACAGGGTTAATCTTGAAAATATAAAAAGA
TGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCAATTCTCCATCTTACAGCACAAGCCATTGCTGATCTGTTCAGGAATTT
TTCCCCTGTGCCCATATCTTCATTTTTTTTCCCCACTTTCTCCTCTATAA
GTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTG
ACCTTAGTACAAGGAGATAAGTATGGATCGATTCGAATTCTTCTACACGA
TAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCC
ACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGT
GGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTC
TCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCT
TTAGGTCTGGCATGGTGATTCCGCCAGAATTTCTCACCCATGGAAGGAGT
TACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGAC
TGCCATATCCAGGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_h19.b1 MSMg01no510_h19.b1 CHROMAT_FILE:
MSMg01no510_h19.b1 PHD_FILE: MSMg01no510_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:05 2005
         (692 letters)



>mm_chr10_102233730_102234822
          Length = 1093

 Score = 1158 bits (599), Expect = 0.0
 Identities = 669/693 (96%), Gaps = 3/693 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccaatacttaagcttttagggtttgctagggcaataccccactttgagtgccaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 agccaatacttaagcttttagggtttgctagggcaataccccactttgagtgccaaattc 833

                                                                       
Query: 61  tattactgaacagtatcccaaatatcagtgatgtac--aaaaaaaatgtcattctcaaag 118
           ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||
Sbjct: 832 tattactgaacagtatcccaaatatcattgatgtacaaaaaaaaaatgtcattctcaaag 773

                                                                       
Query: 119 ttttaattcaagaatgtaaataggactcagaagggaagtttctttctactgtataatatt 178
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 772 tgttaattcaagaatgtaaataggacccagaagggaagtttctttctactgtataatatt 713

                                                                       
Query: 179 tggagcatcattttagatgatccaagtgattcaaagagacttgaaaggctgggcacttgg 238
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 712 tggagcatcattttagatgatctaagtgattcaaagagacttgaaaggctgggcacttgg 653

                                                                       
Query: 239 attgctgagattcttctctggctgtgcatctgccataaaggttgaattggctcaaagtct 298
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 attgctgagatgcttctttggctgtgcatctgccataaaggttgaattggctcaaagtct 593

                                                                       
Query: 299 gagctttacaagactgaaaataagagagttttcctgtggaatctctcagtgttagggggg 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 592 gagctttacaagactgaaaataagagagttttcctgtggaatctctcagtgttaggtggg 533

                                                                       
Query: 359 tagaatcaaaagtcagattaatgaaacatgcagaattttgtgtattgcgcataatctgtc 418
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 532 tagaatcaaaagtcagattaatgaaacatgcagaattttgtgtattgcacgtaatctgtc 473

                                                                       
Query: 419 atggagtttacagcttacttcatgaataatgtaataacgctcataatggttttttggtta 478
           ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 atgaagtttacaacttacttcatgaataatgtaataatgctcataatggttttttggtta 413

                                                                       
Query: 479 ttattctagcaattttgcattctatttatttatttggaattttatgcaataagaaagaag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttattctagcaattttgcattctatttatttatttggaattttatgcaataagaaagaag 353

                                                                       
Query: 539 tgagatgattctgttggcagaaatgtatatgtcactattacaaggttttttttttaacat 598
           | |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||
Sbjct: 352 ttagatgattctgttggcagaaatgtatatatcactattacaaggtttttttta-aacat 294

                                                                       
Query: 599 ttcttgcatagtctcaaatttgttgctgtactttgaaaataataaactttatctaactgg 658
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 293 ttcttgcatagtctcgaatttgttgctgtactttgaaaataataaactttatgtaactgg 234

                                            
Query: 659 aaaaatatgaatgctatttaggtaatcatatta 691
           |||||||||||| | ||||||  ||||||||||
Sbjct: 233 aaaaatatgaattccatttagccaatcatatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space:   738606
Effective search space used:   738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)