BAC Information

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BAC

Clone NameMSMg01-511B18
Chromosome10 (Build37)
Map Location 22,753,831 - 22,940,681
singlet/doubletdoublet
Overlap geneEya4
Upstream geneLOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511B18.T7 (MSMg01no511_b18.b1)MSMg01-511B18.TJ (MSMg01no511_b18.g1)
ACCAG584384AG584385
length758770
length of high quality
(start - end)		574 (69 - 642)481 (73 - 553)
definitionCHROMAT_FILE: MSMg01no511_b18.b1 PHD_FILE: MSMg01no511_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:52 2005CHROMAT_FILE: MSMg01no511_b18.g1 PHD_FILE: MSMg01no511_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,940,108 - 22,940,681)(22,753,831 - 22,754,311)
sequence
CTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAAAATCTCTAATCAGAACACAAAGCACTACACTCCTACATATTTA
AGCCACTTCTTTCCCATTATAAAGCAAACTTCCGCTGGAAATGATAGATG
ACTGATGGACGGAGAGAGGTCCTAAGACTGAGGTTTAATTCTCTTGTGGT
TTAGTTAACTCAAGTCATAATACAGCTTAATCCCTTTCTCCCTATCTGGG
GAGTGTTTTGTCTCATTTCAAAGTCTGACCTCATGTGGATTCCTCTCCAT
TCTCTTCATTATTTTGGCTGGCATTCACTGGAGGGTTTCTAATTCATTTT
GCCTTTTCTGGTCTGTGTTGACAGATTCCTACAGGTGTGGATGCAGCTGG
AGCCAGACGAAGACAAATGACATGCTCTGCCTTGTGGATCATTATAGCCA
CAAGAGTTAGCATTGCTTGACCCTTTGGTCATGAGAGCAAACTGAGCAGA
TTTCTTAGAAAAAATGTCTACAAAATCCTGAGCATTGATTTAAATAAGAT
TCAAAACTTAGGTTTTTGTGTGTTTTATAAACTATACCGTCACCAGTCAT
TTCTTAAATTTCTTTGGAAGCGTCTGGTGAGTTACCTTCACTGGTCAGCA
GAGTGTAGAGCTAACCGTGTACTTGTTACCTGTTTTTTTAGAATGAATCA
GCAGTTCTCAATCCCCTTTGTGGGGGTCGAAAGACTCTTTTACAGTGGTC
CTCTAAGA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTCGTCTCCAATGCACAAGTGTGGCTG
TTTGTTCTTGATTCCTCAAGGCTACATGAACTTTGCCTTTACCTTGTATA
TCTAGCCGCTAATGAGATCCAATTTTGATATTCCTGAAAAATTCAGTATT
TCAGTCGTTTATTTTTGTACCAAAGATGCAGATTAATCCTTGTAGGGTTC
ACTTGATAGCACATGTCTGTAACTATATCTGGGTTAGTATTATATTCTCT
AGGTACCAAGATGGTCACCACCACCACCATCATCATCACAATCACTTTGA
TGAAATGGAAATACAGAGTGAACATGAGTCAATCTAACAAAAGCAAATGG
TGTTTAAGAATCACAGAGGATGTGTTTTGCTTACAGGCAAGCTCTATGCT
TGGGAGCTTGACTGAGAACATTCTTTACTGCTTCACAAAGCTCAATACAG
ACCAGAATCAATGAATCAGCCTACTAATGATTTATGAATGCAAAGCAACT
AACTGTAGAATTCCCGAGGCCTTTGCTAAGACTGTCCCATACATACAGGT
ACTGTAAGGGACAACGTATTGTTAATTTTGTCACAAGTACACACATGTGA
GCATATTATGACTTTGAGACAGAATTTCCTGTACCTTTAATTTTAGTAAA
CAGATAATGGGAAGGACAATTTATTGGCCCGGGATCATTTTAACCCGGGG
AAGGGGGTGGATGAAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_b18.b1 MSMg01no511_b18.b1 CHROMAT_FILE:
MSMg01no511_b18.b1 PHD_FILE: MSMg01no511_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:52 2005
         (574 letters)



>mm_chr10_22939908_22940881
          Length = 974

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacacaaagcactacactcctacatatttaagccacttctttcccattataaagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 agaacacaaagcactacactcctacatatttaagccacttctttcccattataaagcaaa 715

                                                                       
Query: 61  cttccgctggaaatgatagatgactgatggacggagagaggtcctaagactgaggtttaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cttccgctggaaatgctagatgactgatggacggagagaggtcctaagactgaggtttaa 655

                                                                       
Query: 121 ttctcttgtggtttagttaactcaagtcataatacagcttaatccctttctccctatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttctcttgtggtttagttaactcaagtcataatacagcttaatccctttctccctatctg 595

                                                                       
Query: 181 gggagtgttttgtctcatttcaaagtctgacctcatgtggattcctctccattctcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 594 gggagtgttttgtctcatttcaaagtctgacctcatgtggattcctccccattctcttca 535

                                                                       
Query: 241 ttattttggctggcattcactggagggtttctaattcattttgccttttctggtctgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 534 ttattttggctggcattcactggagggtttctaattcattttgccttttctgggctgtgt 475

                                                                       
Query: 301 tgacagattcctacaggtgtggatgcagctggagccagacgaagacaaatgacatgctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgacagattcctacaggtgtggatgcagctggagccagacgaagacaaatgacatgctct 415

                                                                       
Query: 361 gccttgtggatcattatagccacaagagttagcattgcttgaccctttggtcatgagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gccttgtggatcattatagccacaagagttagcattgcttgaccctttggtcatgagagc 355

                                                                       
Query: 421 aaactgagcagatttcttagaaaaaatgtctacaaaatcctgagcattgatttaaataag 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 354 aaactgagcagatttcttagaaaaaacgtctacaaaatcctgagcattgatttaaataag 295

                                                                       
Query: 481 attcaaaacttaggtttttgtgtgttttataaactataccgtcaccagtcatttcttaaa 540
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cttcaaaacttaggtttttgtatgttttataaactataccgtcaccagtcatttcttaaa 235

                                             
Query: 541 tttctttggaagcgtctggtgagttaccttcact 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tttctttggaagcgtctggtgagttaccttcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no511_b18.g1 MSMg01no511_b18.g1 CHROMAT_FILE:
MSMg01no511_b18.g1 PHD_FILE: MSMg01no511_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:52 2005
         (481 letters)



>mm_chr10_22753631_22754511
          Length = 881

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcgtctccaatgcacaagtgtggctgtttgttcttgattcctcaaggctacatgaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcgtctccaatgcacaagtgtggctgtttgttcttgattcctcaaggctacatgaact 260

                                                                       
Query: 61  ttgcctttaccttgtatatctagccgctaatgagatccaattttgatattcctgaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctttaccttgtatatctagccgctaatgagatccaattttgatattcctgaaaaat 320

                                                                       
Query: 121 tcagtatttcagtcgtttatttttgtaccaaagatgcagattaatccttgtagggttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtatttcagtcgtttatttttgtaccaaagatgcagattaatccttgtagggttcac 380

                                                                       
Query: 181 ttgatagcacatgtctgtaactatatctgggttagtattatattctctaggtaccaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatagcacatgtctgtaactatatctgggttagtattatattctctaggtaccaagat 440

                                                                       
Query: 241 ggtcaccaccaccaccatcatcatcacaatcactttgatgaaatggaaatacagagtgaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ggtcaccaccaccaccatcatcatcacaatcactttgatgaaatggaaatacagagtgga 500

                                                                       
Query: 301 catgagtcaatctaacaaaagcaaatggtgtttaagaatcacagaggatgtgttttgctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgagtcaatctaacaaaagcaaatggtgtttaagaatcacagaggatgtgttttgctt 560

                                                                       
Query: 361 acaggcaagctctatgcttgggagcttgactgagaacattctttactgcttcacaaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaggcaagctctatgcttgggagcttgactgagaacattctttactgcttcacaaagct 620

                                                                       
Query: 421 caatacagaccagaatcaatgaatcagcctactaatgatttatgaatgcaaagcaactaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatacagaccagaatcaatgaatcagcctactaatgatttatgaatgcaaagcaactaa 680

            
Query: 481 c 481
           |
Sbjct: 681 c 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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