Query= MSMg01no511_f09.b1 MSMg01no511_f09.b1 CHROMAT_FILE:
MSMg01no511_f09.b1 PHD_FILE: MSMg01no511_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:10 2005
(594 letters)
>mm_chr10_73800665_73801658
Length = 994
Score = 851 bits (440), Expect = 0.0
Identities = 538/590 (91%), Gaps = 31/590 (5%)
Strand = Plus / Plus
Query: 5 gaattcattgtatccaactctttttatataaaatttaggattattattcataaaatgaga 64
||||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||| |
Sbjct: 205 gaattcattgtataaaactctatttatataaaatttatgattattattgataaaatgaca 264
Query: 65 tactttcagattcaaataacatttttttaaggtagagttgactggtgtttcaagaaatca 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 tactttcagattcaaataacatttttttaaggtagagttcactggtgtttcaagaaattt 324
Query: 125 cagtatcaaattcagccttaggcataactgtatatgaggatattagtatcagtgatactt 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 325 cagtatcaaattcagccttaggcataactgtatatgaggctattagtatcagtgatagtt 384
Query: 185 ctttttatttcctgggcctgctttatctgggtagaagtttatctcagctcagggcagaca 244
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 385 ctttttatttcctgggcctgctttatctggttagaagtttatctcagctcagcgcagaca 444
Query: 245 ggatcagcaacaatatccatgaagccatggctcagcctcactacagtggcttataggagt 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggatcagcggcaatatccatgaagccatggctcagcctcactacagtggcttataggagc 504
Query: 305 tgagtgttgacatcacacacacacacatacacacacaaacacacacacacacacacacac 364
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tgagtgttgacatcacacacacacaca------------cacacacacacacacacacac 552
Query: 365 acacacacacacacggactgggaagtgataaactactcaacaaaagaacaaacaaacaaa 424
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acacacacacatatggactgggaagtgataaactactcaacaaaagaacaaacaaacaaa 612
Query: 425 caaaaacaaaacaaacaaaaaacaactaactctcgcactaaaaccaacccaggatgccca 484
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 -------------------aaacaactaactctctcactaaaaccaacccaggatgccca 653
Query: 485 gaaaggtgatcagtggtcaaatcagatacattttcaaaataccaagatggaaatatggaa 544
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 654 gaaaggtgatcagtggtcaaatcagatacattttcaaaataccaggatggaattatggaa 713
Query: 545 aggtatgattcaacttaatgataagaagtacggaaaaggaataaatagtt 594
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aggtatgattcaacttaatgataagaagtacggaaaaggaataaatagtt 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_f09.g1 MSMg01no511_f09.g1 CHROMAT_FILE:
MSMg01no511_f09.g1 PHD_FILE: MSMg01no511_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:11 2005
(505 letters)
>mm_chr10_73951483_73952387
Length = 905
Score = 930 bits (481), Expect = 0.0
Identities = 499/505 (98%)
Strand = Plus / Minus
Query: 1 tacccaacccatttcactgattcataggtaggattctatccataaacaataaattatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tacccaacccatttcactgattcataggtaggattctatccataaacaataaattatgag 646
Query: 61 attgtccaatctcctttataattcagaataacaaagaattgaaagaaccagagagtctgt 120
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 645 attgtcaaatctcctttataattcagagtaacaaagaattgaaagaaccagaaagtctgt 586
Query: 121 agttgactgaaatctcttgaagaccttaaccctcatataggtcttgtgacttcttgcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agttgactgaaatctcttgaagaccttaaccctcatataggtcttgtgacttcttgcaat 526
Query: 181 tttggtaccagataattggcaatgttttgttctctaagtttacagttttgttaatagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 525 tttggtaccagataattggcaatgttttgttctctaagtttacagttttattaatagaat 466
Query: 241 ctatctgtagttaatatttatattcagacatagtaggaaacactacattatttattgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctatctgtagttaatatttatattcagacatagtaggaaacactacattatttattgaga 406
Query: 301 acaacatttgtgtttttcaaagttggtcttgacaaagacatatagaaaagaaagctaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acaacatttgtgtttttcaaagttggtcttgacaaagacatatagaaaagaaagctaaaa 346
Query: 361 gagcaatggccagatagattcttatcatgactttgtcctcaaagcctgaaggctttagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagcaatggccagatagattcttatcatgactttgtcctcaaagcctgaaggctttagat 286
Query: 421 gaagacaaggctcagcatgttcctctgagaatctgaggcatacctgtactaacagggaac 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaagacaaggctcagcgtgttcctctgagaatctgaggcatacctgtactaacagggaac 226
Query: 481 cagccaagcccaagctggggcccag 505
||||||||||||||||||||||||
Sbjct: 225 aagccaagcccaagctggggcccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
