BAC Information

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BAC

Clone NameMSMg01-511I08
Chromosome10 (Build37)
Map Location 62,669,492 - 62,669,839
singlet/doubletsinglet
Overlap geneMypn
Upstream geneTspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7
Downstream gene1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I08.T7 (MSMg01no511_i08.b1)MSMg01-511I08.TJ (MSMg01no511_i08.g1)
ACCAG584697AG584698
length712741
length of high quality
(start - end)
191 (46 - 236)348 (76 - 423)
definitionCHROMAT_FILE: MSMg01no511_i08.b1 PHD_FILE: MSMg01no511_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:24 2005CHROMAT_FILE: MSMg01no511_i08.g1 PHD_FILE: MSMg01no511_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTGAGTTTATATATGTGTCACAGTTCTTACTGTGTCTAGAAG
GCAGGCTTTCCTAGATGTCCTCCATCCCCTCTGGCTCTTATAATCTTTCT
ACCTCCACTTCTGAATATTGTATGGAGTCCTGAAGGGAGGGGTTTGATGA
GACATCCCATTCAGAACTGAGTGTTTCTTTTTTGGGGCTGGTGGAGAAGT
GGGCGTTCTGAGACAGGGTTTCCCTGTATAGTCCTGGCTGTCCTGGATCT
CACTCTGTATACCACGCCTCTAACTCACATTTCTGCCTGCCTCTGCCTCC
TAAGTGCTAGGATCTATAAGTCGTGTGTCTCCACTTTCCTGGCCTGAGTG
TTTCAAAGTCTCTCATTCTGTGCACACTGCGTACTGTGGGTCTCTGTATA
TGCTCCCCATCTCCTGCATTATGACGCTTCTCCTCTGCTGGCTGATTGAA
GTACTCATCTTTGTGTATAGCCCAATGTCACTTGTACTCCCTTTATTGCG
AGGTGCTTTTCACCGATCAATAGTCTTGGTTTTTTTTCTTTTTCCACGCC
CCATTTAGTTTACAGTTTCTGGCCACCTGGGCCCTGTCTGTACACGTTTT
CCTACCCCTTGGTTTGGCGACATGTATTCCACCTTTATTATTGGTAATGT
CGTGCCTACTCC
CAATGCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGCAGTCCTCCTGCCTCAGCCTCC
CAAGTACAAAGATTGCAAGAATGTGTCACCTTAGGGTGGGGGTGGTGCAC
ACCTTTGATCCCAGCACTGGGTGGGCAAGGCAGGTGGATTTCTGAGTTCA
AGGCCAGCCTCGTCTGCAGAGCTACCACGAAATGTCAAACTTAAATAGTC
TTGATGTTCAGGGAGATTGTGGAGGATGATAAACTACATGTGATACAGAA
GTGGAATGGGACCTCTGGGGAATGGAAGGGGCTATGGAGGGATGAGGGCA
ACAGAGAGATGGGGGTGGGGGGAACAGCGTGAGGGAGAGGATCAACCAAA
ATGAACCGTTGTATTAAAATGCCTCGCACAAGTCTGCTACTTTGCACGCT
TTTTTTTACATTAATTTTAATTTACAATTTCTTTAAGTAATCTAACCAGA
TATTCCATTCTTCCCTGCGTTCCTCTCTCTTTCCCCAGTATAAACACATT
ATCTGGTAATTTTTTTAGTCTGGGGATATCTCTGCTGTGATCACTATAAT
CAAACTTCCTCTCTATTCTACTCCTTTATGGAGTCTTTCATATGACTTGT
CCATGACAAAGTGTTTTTTGTAACCTTTTTTTATGTCTTGCAATACGACG
TTGACCCCTTTTCTCATTCCCTCCTTCACTTCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i08.g1 MSMg01no511_i08.g1 CHROMAT_FILE:
MSMg01no511_i08.g1 PHD_FILE: MSMg01no511_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:25 2005
         (348 letters)



>mm_chr10_62669146_62669893
          Length = 748

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcagtcctcctgcctcagcctcccaagtacaaagattgcaagaatgtgtcaccttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cagcagtcctcctgcctcagcctcccaagtacaaagattgcaagaatgtgtcaccttagg 635

                                                                       
Query: 61  gtgggggtggtgcacacctttgatcccagcactgggtgggcaaggcaggtggatttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gtgggggtggtgcacacctttgatcccagcactgggtgggcaaggcaggtggatttctga 575

                                                                       
Query: 121 gttcaaggccagcctcgtctgcagagctaccacgaaatgtcaaacttaaatagtcttgat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 574 gttcaaggccagcctcgtctgcagagctaccacgaaatgtcaaatttaaatagtcttgat 515

                                                                       
Query: 181 gttcagggagattgtggaggatgataaactacatgtgatacagaagtggaatgggacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gttcagggagattgtggaggatgataaactacatgtgatacagaagtggaatgggacctc 455

                                                                       
Query: 241 tggggaatggaaggggctatggagggatgagggcaacagagagatgggggtggggggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tggggaatggaaggggctatggagggatgagggcaacagagagatgggggtggggggaac 395

                                                           
Query: 301 agcgtgagggagaggatcaaccaaaatgaaccgttgtattaaaatgcc 348
           ||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 394 agcgtgagggagaggatcaaccaaaatgaagtgttgtattaaaatgcc 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)