BAC Information

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BAC

Clone NameMSMg01-512A10
Chromosome10 (Build37)
Map Location 126,644,589 - 126,645,118
singlet/doubletsinglet
Overlap genePip5k2c
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3
Downstream geneKif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512A10.T7 (MSMg01no512_a10.b1)MSMg01-512A10.TJ (MSMg01no512_a10.g1)
ACCAG585082AG585083
length778745
length of high quality
(start - end)		375 (60 - 434)532 (69 - 600)
definitionCHROMAT_FILE: MSMg01no512_a10.b1 PHD_FILE: MSMg01no512_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:03 2005CHROMAT_FILE: MSMg01no512_a10.g1 PHD_FILE: MSMg01no512_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAGAGGATCCGCGGAATTC
ACTGTTCCATACACCAGGTCAGCTTGTAACTCTACCTGCCTCTGCCTCCT
GAGTGCTGAGATTAAAAGCCTGGGCTCACAGTCCATCTTAAACTGTTATT
TTTTTTAATGAATTAAGTTATATAAGGTATGGTTACTCTTGCCTGTTGTG
GTGGTTTCAATAAGAATGGTCCTCATACCCTATAGGTGGAACAACATTAT
GAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAA
AGATGGCCTATTCGGCCATCACTGGAAAGAGAGGCCCAATGGACACGCAA
ACTTTGTATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTG
GGTGGGNTAGGGGAGTGGGGTTTTTTTTTTTTTTTTTTTCCTTCCTTTTC
TCGCTGTCTCTTCCCTCTTTCTTTTTTTTCTTTTCTCCTTCTTTCTTTCT
TATTTTTCCCCCTTTTTTCCTTTTTTTTCCTTCTCCCCCTCTCTCCTTTT
TTTCTCTTTTCTCCCTTTTCTTTCTTTCAATTTACTCTTCCTTTCTTATT
CCTATTTTATTCACACCCCCTCTTCTTTATTTCATTTATTCTTATTCTAT
CCCCTTCTCCTACAACTACTTCAATTATATTTTTTCTCTCTCCCCATATG
CGTTTATCATCACTTCCCTTTTTATTTCTTCTTTTTATCCCCTATTTCTA
TTCTCCCCTATTTCTCCTTTTCCCTCTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCCAGCCTCGTCTACAGAGTGAGTTCCAG
GACAGCCAGTGCTATATAGAAAAAACCCTGTCTCAAAAAAACCAACCAAC
CAAATAAATAAAATTGGCGGTATTTACTGATATTTTGAATGGCATCATCT
TGTTTTAGAAGGCCTCTAGAGGTCACAATTTTTTGGTTACGGAATCCCTA
CCAAAAGCTAATGACAAAGCTTCTGCATGCATTATTACTGGATGGAATAG
ACTAGAAGAAAGGGAGTAGGTGTATATACAAGAATGCAGGTAACTTTGGA
AATATTTAAATTTAAAATTTTAATTAATTAATTGGTTATTTTTGAGACAG
GGTCTCCCTATGTAGTCTATGTAGGCCAGTAGCTCAATATGCACACCAGG
CTGCCTGGAACTCAGAGATCTATCCACCCGCCTCTGCCTCCCAAGTGCTG
GGATTTTACAGGTGTGCATCACCACACCCAGGTATCTACTCATGTGTGTG
TGTGCGTGGTGTGTGGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNN
TTTNNNNNNNNNNNNNNNNTTTTTTTTTTTNNTTTNTTTTTTTNNTTTNT
TTTTTTTTNTTTTTTNNTTTTTTTTTTNNTTTNTGTNNTTTTTTNTTTNT
TTTTTTTTTTTTTNTTTTTTTTTTTCTTTTTTTGTGCCCTTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_a10.g1 MSMg01no512_a10.g1 CHROMAT_FILE:
MSMg01no512_a10.g1 PHD_FILE: MSMg01no512_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:03 2005
         (532 letters)



>mm_chr10_126644389_126645320
          Length = 932

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctcgtctacagagtgagttccaggacagccagtgctatatagaaaaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagcctcgtctacagagtgagttccaggacagccagtgctatatagaaaaaaccc 260

                                                                       
Query: 61  tgtctcaaaaaaaccaaccaaccaaataaataaaattggcggtatttactgatattttga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tgtctcaaaaaaaccaaccaaccaaataaataaaattggtggtatttactgatattttga 320

                                                                       
Query: 121 atggcatcatcttgttttagaaggcctctagaggtcacaattttttggttacggaatccc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcatcatcttgtattagaaggcctctagaggtcacaattttttggttacggaatccc 380

                                                                       
Query: 181 taccaaaagctaatgacaaagcttctgcatgcattattactggatggaatagactagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccaaaagctaatgacaaagcttctgcatgcattattactggatggaatagactagaag 440

                                                                       
Query: 241 aaagggagtaggtgtatatacaagaatgcaggtaactttggaaatatttaaatttaaaat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagggagtaggtgcatatacaagaatgcaggtaactttggaaatatttaaatttaaaat 500

                                                                       
Query: 301 tttaattaattaattggttatttttgagacagggtctccctatgtagtctatgtaggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaattaattaattggttatttttgagacagggtctccctatgtagtctatgtaggcca 560

                                                                       
Query: 361 gtagctcaatatgcacaccaggctgcctggaactcagagatctatccacccgcctctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagctcaatatgcacaccaggctgcctggaactcagagatctatccacccgcctctgcc 620

                                                                       
Query: 421 tcccaagtgctgggattttacaggtgtgcatcaccacacccaggtatctactcatgtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccaagtgctgggattttacaggtgtgcatcaccacacccaggtatctactcatgtgtg 680

                                                             
Query: 481 tgtgtgcgtggtgtgtggcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgtgcgtggtgtgtggcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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