BAC Information

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BAC

Clone NameMSMg01-512B03
Chromosome10 (Build37)
Map Location 91,087,704 - 91,088,012
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229, LOC100041814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B03.T7 (MSMg01no512_b03.b1)MSMg01-512B03.TJ (MSMg01no512_b03.g1)
ACCAG585116AG585117
length737729
length of high quality
(start - end)
694 (42 - 735)585 (70 - 654)
definitionCHROMAT_FILE: MSMg01no512_b03.b1 PHD_FILE: MSMg01no512_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:06 2005CHROMAT_FILE: MSMg01no512_b03.g1 PHD_FILE: MSMg01no512_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATAGCCACTGTGGCTCAAGATCTTCAAACCAAGATCCAGATAAGGATCT
CCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTA
ATTCATTCCAAATATTGTCAAGTTGACAACCAGGAATAGCCACTACAATC
CACCCCTTGTCAACTTGACACAAATAATATCTCATGTTCACATAAAACAA
TAACAAGGTTGTAAATACGCCTAACATGATATAACTATCCCTCGTACAAT
CGCAAACGCATTAGTAAATTTACAATGGGCATTCATATTACTTTATAATC
CTCGTTTCTGCAACTGGTTACGTGGCCTTAATTGGTATTTATAACTACCT
TCCTCTACTACCCATTCTGTATTCTACGAGCTATCGATTCAACAGACATT
GGGATTGGGCCAGTTCAACTATTAACAAGGTTAATGGTGATAACGATCCA
GCCCATAAATGTCACCCACTTTTGTGTGTAGATGAGCATTTTTAAATAGA
CGATTCATGTTCAGTAACAATAATACACTATTATTTATTCTTCACCATGC
AAAAAGTCTGGAGATATGAAGGACTGACAGTAAAGTGCTGGGTGAGAGCT
CTTGAACACGTTGATGGAAGGGCAGAAACCTCCCTGGAAGGCTCTTGGCT
CGGCAGCTACACCTCCTGTCATCAATTCTAGAAGGGC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGTTTGCTGAGTTAAAGAGATAAACAGCC
CTTCGTATATAAAAAAGAGAACAATCTTACATGGCCTTGGATGCTCTTAA
GACTGCCCTGATGTTATCCCCAGCTATGGGACTCCTAGATGTGACTGAGA
ACAAAGGTATTGCCAAAAAAGTTCTTACTCAGAGATTGGGACCCTGAAAA
AGACCTGTGGCATACTTATAAAAAATTAGACCTGGTGGCTGTAGGATGGC
CTGCTTGTCTGCACATAGTGGCTTCTGGTCAAGGACGCAGATAAATTGAC
TCTGAGACAAAACTTGGCACATGTCCTAGAAAGTGTGGTTCAGCCCCCAT
GACCGATGGCTGACTAACGCTCTTGAAAGCATTATCCAACTGTTCCCCTG
ACCGATGGACACATTGTCAGAGCTTTTTGTTGACTGAACGAGTGACCTTC
GCTCCCCCTGCTGTCCTCAATCTCACTACTGCCTGAGACTTCACCTACTC
ATCATTGTGCTGACATTCTAGCAGAAGAAACTCATACTCAAAATGATCTG
AAGGATCAGATCAGCCTTGGCCTGAGAGTTTGAGCTGGTACACGGATGGC
AGTAGCCTGGAGGTTGAAGGTAAGCGGAAGGCGGGGACAGCAGTGCAGTG
GTGGACAGAAAGCAAGTGATCTAGGCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b03.b1 MSMg01no512_b03.b1 CHROMAT_FILE:
MSMg01no512_b03.b1 PHD_FILE: MSMg01no512_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:06 2005
         (694 letters)



>mm_chr10_91087118_91088212
          Length = 1095

 Score =  590 bits (305), Expect = e-172
 Identities = 308/309 (99%), Gaps = 1/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 387 gagctatcgattcaacagacattgggattgggccagttcaactattaacaaggttaatgg 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gagctatcgattcaacagacattgggattgggccagttcaactattaacaaggttaatgg 836

                                                                       
Query: 447 tgataacgatccagcccataaatgtcacccacttttgtgtgtagatgagcatttttaaat 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tgataacgatccagcccataaatgtcacccacttttgtgtgtagatgagcatttttaaat 776

                                                                       
Query: 507 -agacgattcatgttcagtaacaataatacactattatttattcttcaccatgcaaaaag 565
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aagacgattcatgttcagtaacaataatacactattatttattcttcaccatgcaaaaag 716

                                                                       
Query: 566 tctggagatatgaaggactgacagtaaagtgctgggtgagagctcttgaacacgttgatg 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tctggagatatgaaggactgacagtaaagtgctgggtgagagctcttgaacacgttgatg 656

                                                                       
Query: 626 gaagggcagaaacctccctggaaggctcttggctcggcagctacacctcctgtcatcaat 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaagggcagaaacctccctggaaggctcttggctcggcagctacacctcctgtcatcaat 596

                    
Query: 686 tctagaagg 694
           |||||||||
Sbjct: 595 tctagaagg 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space:   742140
Effective search space used:   742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)