Query= MSMg01no512_c16.b1 MSMg01no512_c16.b1 CHROMAT_FILE:
MSMg01no512_c16.b1 PHD_FILE: MSMg01no512_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:13 2005
(667 letters)
>mm_chr10_72625910_72626979
Length = 1070
Score = 1071 bits (554), Expect = 0.0
Identities = 637/678 (93%), Gaps = 25/678 (3%)
Strand = Plus / Plus
Query: 5 gaattcttacttatatttgttttgtgtttgtttgtttctttgttttcccctgaatttgcc 64
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 205 gaattcttgcttatatttgttttgtgtttgcttgtttctttgttttcccccgaatttgcc 264
Query: 65 taatcagttacattctcgacaaca-ggagaaagatacaagccagaatcttccagtgagag 123
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 taatcagttacattctcaacaacaaggagaaagatacaagccagaatcttccagtgagag 324
Query: 124 actggtgctgacaggtgtagggaagggaatgagaggatgctggaccttctggtaggtcct 183
||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 325 actggtggtgataggtgtagggaagggaataagaggatgctgaaccttctggtaggtcct 384
Query: 184 tttctactctgtccttccttgtttgaagcttgtactctagtggtgccccatttccaagta 243
|||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tttctactctgtccttccctatttgaagcttatactctagtggtgccccatttccaagta 444
Query: 244 cagcttttgtttttctattagtgcatattttttt--attacatcttgtgttttcccccaa 301
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 cagcttttgtttttttattagtgcatatttttttttattacatcttgtgttttcccccaa 504
Query: 302 gactataatacaattttattatttcctcccttctttttttcctatatataactttccttg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gactataatacaattttattatttcctcccttctttttttcctatatataactttccttg 564
Query: 362 ctctctttcaaattcgtggtctatttttacatttattgttattgcagtcatacacaacta 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctctttcaaattcatggtctatttttacatttattgttattgcagtcatacacaacta 624
Query: 422 ctactactactacta-t--------------tactactactactacactaattataacct 466
||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 625 ctactactactactactactactactactactactactactactacactaattataacct 684
Query: 467 gcttagtctgcataatactacctgtattcatgctttcacagctgaccatttggcattaga 526
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 685 gcttagtctgcataatactacctgtattcatgctttcacggctgaccatttggcattaga 744
Query: 527 tactctactgatagatatgcctttcccttgggaaagcaatttctcctgctctcaatactc 586
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 745 tactctactgatagatatgcctttccc-------agcaatttctcctgctctcaatactc 797
Query: 587 cttagttgcctgtagttctttgtgtagggttgaggccgcattagcttttctttgtccact 646
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 798 cttatttgcctgtagttctttgtgtagggttgaggccacattagcttttctttgtccact 857
Query: 647 ttggcatgttgattgctt 664
||||||||||||||||||
Sbjct: 858 ttggcatgttgattgctt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_c16.g1 MSMg01no512_c16.g1 CHROMAT_FILE:
MSMg01no512_c16.g1 PHD_FILE: MSMg01no512_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:14 2005
(577 letters)
>mm_chr10_72787061_72788038
Length = 978
Score = 965 bits (499), Expect = 0.0
Identities = 559/579 (96%), Gaps = 3/579 (0%)
Strand = Plus / Minus
Query: 1 ctttatgaatgtaaaatacattataccttccttatattaaaactattgcagacaattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctttatgaatgtaaaatacattataccttccttatattaaaactattgcagacaattcat 719
Query: 61 gttggtggaatttagagatagctgctgccctcagagctgtaaacacgtacatattcctac 120
|||||||||||||||||| |||||||||||||||||||||||||| || | |||||||||
Sbjct: 718 gttggtggaatttagagacagctgctgccctcagagctgtaaacatgtccgtattcctac 659
Query: 121 tagggtaaagctcaagcaagatgaagaactgcacataactttctatgtatttaaattgga 180
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 658 tagggtgcagctcaagcaagatgaagacctgcacataactttctatgtatttaaattgga 599
Query: 181 tgaag-tgatgcactcagtcataccaatctcatgcattaacaacatgaactgaactatgt 239
||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 598 tgaagct-atgcactcagtcataccaatgtcatgcatgaacaacatgaactgaactatgt 540
Query: 240 attattaaaatatgaacatataatatgcatttatttctacaacagtaaaacacactgtca 299
||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 539 attgttaaaatatggacatataatatgcacttatttctacaacagtaaaacacactaaca 480
Query: 300 aattcacatgattaaactttcccaaggtaactattttactcaaacgttgaaaaacaacaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aattcacatgattaaactttcccaaggtaactattttactcaaacgttgaaaaacaacaa 420
Query: 360 tagaattgaacttttctattagaattaatttttgaaatatgcatatcctagtcatttctg 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 419 tagaattgaacttttctattagaattaatttttgaaatgtgcatatcctagtcatttctg 360
Query: 420 tttatgtt-aaaaatatcacagataaaagactgttttgcaagatattaacaagtcttatc 478
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tttatgttaaaaaatatcacagataaaagactgttttgcaagatattaacaagtcttatc 300
Query: 479 tcatttctaaacttcaaggaattaatttgctgatattggagtagaatttataagcttaat 538
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 299 tcatttctaaacttcaaggaattagtgtgctgatattggagtagaatttataagcttaat 240
Query: 539 taataaaaatggcaaatgaatccacttaattgagctgag 577
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taataaaaatggcaaatgaatccacttaattgagctgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
