BAC Information

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BAC

Clone NameMSMg01-512G12
Chromosome10 (Build37)
Map Location 115,305,133 - 115,305,447
singlet/doubletsinglet
Overlap genenone
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
Downstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512G12.T7 (MSMg01no512_g12.b1)MSMg01-512G12.TJ (MSMg01no512_g12.g1)
ACCAG585373AG585374
length712719
length of high quality
(start - end)
220 (252 - 471)315 (304 - 618)
definitionCHROMAT_FILE: MSMg01no512_g12.b1 PHD_FILE: MSMg01no512_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:33 2005CHROMAT_FILE: MSMg01no512_g12.g1 PHD_FILE: MSMg01no512_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGATCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTACTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGATTTAGCTCCCTTGTCGAACATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGGCTA
CTTGTCTGTCTCTATACCAGTACCATGCAGATTTTATCACAATTGCTCTG
TAGCACAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTATC
CTTGAGAAGACT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATACGCTGGCATGAGTAGCAAATAATT
GTTTTTCTTTGTTCTTCTGCCAGCCATTTAAGACATAGAAAGAATTTTCA
GCTCACAGAACACACTAAGACAGATCAACAACGGGGCCCAATCCAATCGA
CAGACCCCTATTCCCTCTCGACAATTACTGAGAAACCAATTGTGCTACAT
CCGTACCAAAAACAAGCAAGTTGTGTTCCAATTACACATTCGTGGCCTAG
GGTCTTTCCTTTGCCAACTTTTATTAAGATTACAGGCTTTTTAAAAATCA
CAATACTATCATGGTTTTTACATTTGGAAACAAATATTCACTCCATTATA
ACTTTTAAAGTAATTTAAATGTAATGTATTTCTAAAATAAATTATTAATT
CGACTGTGATTATAAAAACCAAATTTCAGCCACTCTTTTAATCTTCACCC
TTTTAATCATAATCTAATTCATTATTTTATTATAACGATCAAGATGTTCC
TGAAATCTAATTATAGTTGCCTGTGCAGAGACTATGCATACATTTTATAT
TTACTTGTTGTATCAACAAGATATGGGTTCTCTTCTGTGTGAGTAGGTAG
GAAGATAATGTGATTTAGCAATGTGGAAAAGACTCCTTGCCATCAAATAC
ATTCCTCTACCCTACCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_g12.g1 MSMg01no512_g12.g1 CHROMAT_FILE:
MSMg01no512_g12.g1 PHD_FILE: MSMg01no512_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:33 2005
         (315 letters)



>mm_chr10_115304786_115305500
          Length = 715

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcctttgccaacttttattaagattacaggctttttaaaaatcacaatactatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 662 ctttcctttgccaacttttattaagattacaggctttttaaaaatcacaatacaatcatg 603

                                                                       
Query: 61  gtttttacatttggaaacaaatattcactccattataacttttaaagtaatttaaatgta 120
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttttttacatttggagacaaatattcactccattataacttttaaagtaatttaaatgta 543

                                                                       
Query: 121 atgta-tttctaaaataaattattaattcgactgtgattataaaaaccaaatttcagcca 179
           ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgtattttttaaaa-aaattattaattcgactgtgattataaaaaccaaatttcagcca 484

                                                                       
Query: 180 ctcttttaatcttcacccttttaatcataatctaattcattattttattataacgatcaa 239
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctcttttaatcttcactcttttaatcataatctaattcattattttattataacgatcaa 424

                                                                       
Query: 240 gatgttcctgaaatctaattatagttgcctgtgcagagactatgcatacattttatattt 299
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 423 gatgttcctgaaatctaattatagttgcctgtgcagtgactatgcatacattttatattt 364

                           
Query: 300 acttgttgtatcaaca 315
           ||||||||||||||||
Sbjct: 363 acttgttgtatcaaca 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)