BAC Information

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BAC

Clone NameMSMg01-512I02
Chromosome10 (Build37)
Map Location 10,409,586 - 10,409,770
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512I02.T7 (MSMg01no512_i02.b1)MSMg01-512I02.TJ (MSMg01no512_i02.g1)
ACCAG585449AG585450
length786670
length of high quality
(start - end)
189 (41 - 229)---
definitionCHROMAT_FILE: MSMg01no512_i02.b1 PHD_FILE: MSMg01no512_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:41 2005CHROMAT_FILE: MSMg01no512_i02.g1 PHD_FILE: MSMg01no512_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAGTTTCTTGTCCTCTGTGCAGGATCCATGTGTAAATAAACCCATCTC
TATTTTATTCATAGTTCTAACGGCAAGTCTGTGTCATGGTCTGAACCAGG
TGGAAGACAGGCGCCCAAGGGACAGCATGTGTGGCAGCGCCTCTCTGTGC
ACGTGAAGACCAATGAGACGGCCTGTAACTCANNAACAGNCTCGNNNTAA
TTTAAACTCCTTCTCACCTAAAAAAAGTTACCTAAGGCTCTGGCAGAGTC
TGACCTTTTCAACGCCAGCACAAGACCTTTACACGTGGNAGAAGAGGACA
TACCCCTTCAACTCACTTTCAGGCCTTCCCAGCAGGCCCTTTCCAGGGTT
GGGGGCAACCCGAAAGCCGGGGGCCCACCCCCGGGGGGGCCAACCCAAAA
AACACAACCCTTTTTGGGGCCACCCCACCCTTTAAACGCAAAAAAAAAAA
AAACCCCCCCTTTTTTCCCCCTGGGCCTGAGAAATCTCTGGGCCTTCCCC
CCAAAAAGGGGGGTTTGGGNNNNNNNNNNNNNNNTTGGTGTTGAGGTGAG
TAAGTGNNNNNNNNNCGATGGGCCCAGGCCCCGTCCCTTTTNTGCNNNNC
CTTCTCTGGAGAGAAAAANNNCACACATCCTTTTCGTGGTGGGGGAGGCC
ANCTTCTGGTAAGGGGGGGTGTGGTGGTACCCACCTTTTTTGTTTGGGCG
TGTGAGGTACACCACAAAATATATCTTTTCGGGGGG
AACTCCACTCTCTCCCTCTTTTCCCTTCTTTTTTGTCTAACCCCACCCAC
ACATTTCTTTCATCAAGAATAACTATCTTCACCCAAAACTATAAAAAACA
CCTCCCTCATAATCATACCCTATCTACTATCCGCTCTACTCCTACCTTCT
ATAATCTGCCCAAATATAATATAACACAATAAATCTATCCATCACCCCTC
CTAACATAATTTTTTTGTATTCCCTATGATCCAATATTCTTTTTTCTATT
CTCTGCACAACTGACTATGTCCCCCCACCTCCTCCCCTCTCCTATTNACT
TCTTTTCCTCCTTACCTCCCTCCCCACCGGCATATTTTATCACTCACTAA
TCGATATATGCCCGCCCTNCTCCTNNNNCNNNNNNNNNNNNNNNNNCAAA
AAGAAGAAGACAGACGGGGGNNNNNNNNNNNNNNNAGGAAGGCTCAGAGG
AGGTNNTNNTATCCTGATCNTNNTTNNNCAACGAGGATGAGGGGAGGGGG
GACGGGCCAAGTTGGTATTTCACCCAACCGGNNGGAGNCTCNTCCCCCCC
GCTTNTTTAGGTGCCGCCAGAAAGGCCCCTAAATTGGGGGGGTTTAAGGT
CCCCCCCCGATGGGTCGCGTCCANCCCCNNNNTNCATAGGGAANTCTCCC
CCCCGGCGGGGGANCAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_i02.b1 MSMg01no512_i02.b1 CHROMAT_FILE:
MSMg01no512_i02.b1 PHD_FILE: MSMg01no512_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:41 2005
         (189 letters)



>mm_chr10_10409382_10409970
          Length = 589

 Score =  339 bits (175), Expect = 9e-98
 Identities = 183/187 (97%), Gaps = 4/187 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaag--tttcttgtcctctgtgcaggatccatgtgtaaataaacccatctcta 62
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaattcagaagcctt--ttgtcctctgtgcaggatccatgtgtaaataaacccatctcta 332

                                                                       
Query: 63  ttttattcatagttctaacggcaagtctgtgtcatggtctgaaccaggtggaagacaggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttttattcatagttctaacggcaagtctgtgtcatggtctgaaccaggtggaagacaggc 272

                                                                       
Query: 123 gcccaagggacagcatgtgtggcagcgcctctctgtgcacgtgaagaccaatgagacggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcccaagggacagcatgtgtggcagcgcctctctgtgcacgtgaagaccaatgagacggc 212

                  
Query: 183 ctgtaac 189
           |||||||
Sbjct: 211 ctgtaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)