BAC Information

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BAC

Clone NameMSMg01-512K06
Chromosome10 (Build37)
Map Location 29,218,823 - 29,251,569
singlet/doubletdoublet
Overlap geneRspo3
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneEG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512K06.T7 (MSMg01no512_k06.b1)MSMg01-512K06.TJ (MSMg01no512_k06.g1)
ACCAG585553AG585554
length740750
length of high quality
(start - end)		692 (41 - 732)612 (70 - 681)
definitionCHROMAT_FILE: MSMg01no512_k06.b1 PHD_FILE: MSMg01no512_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:52 2005CHROMAT_FILE: MSMg01no512_k06.g1 PHD_FILE: MSMg01no512_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,250,882 - 29,251,569)(29,218,823 - 29,219,434)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATTTTCCCAATATGTTTAGAGACTAGGCTATTGTGCATAACTGGTCATC
TTTATAAGTGTTGTTGCGATGATGCTGACAAATGACGAATCTGACTAGAG
TGTTTTCTCATCATACTTCATTATTTGATTATCCAGAAGCCTCCCTAGGA
TGATTCTGCCCCCGAGGGCATTTCCTCTCTGCAAGAGGGTATTAGGTACA
ATGTTCTTTAATTGTGGGCATCTATTAACTTCATCTTAGTTTTTCAGATT
TTTAGATCATTCGTGTTTTAGAAATTCATTATATGCCTACCAATTAAAAT
ACAGCTACTACAATCTGCAGAGAGGGGTGAAAAGAATCAAAAGTACAACA
AAAATAATCACACTAATAATATATTTATCGGAACTGATTACTTCCTATGA
TGGTGTAGGGATGTTGACATATGTAAGCTTTTCTGATCTCTTGGTGATTT
TATTGCTGATCCTGGTAATCATGTTAACAGATAAAATAAAAAAAAACACT
GTTAAATTGAAATATTAATGTAATGTTTTATTTGGAGATTTGGAACAATG
CCCTTTTTCGTTTCTTGCCTACATTTGCCACCTGCATGCCTTAGTCTTAA
GAACAACAGTTCAAGAGAGATCTGACCAAGAACTGTTGGAGAAAGTGCAT
TCTATGGCGTATCACATGGTATGAATGCAAATCAAAGATG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACATGATATGTGGCCACAGAAGTAAGAGTTT
AATAAAAGTAGGTTGAATGAATGAATTAGTGAAAGACTAACTGACATAAG
CGAAGGAAGTTCATCTGCAGATGTATTCAACTCCTGTCAAATGACAATTA
GCTTGTGGAGACGGCCATTCATAGGCTCACTAGAAAATTATCTATAATTA
GTTAAAGATATACAACATATTTGTAGGCAGTGGTACTGAGGACATGATTA
AGAAATATGGGGATGATCATTTAAAAATCAGCAACTGTAGTTCTACATGA
AATTTATTTCACCTCATGCACTATCTTCAGTGGTAAGTTTCTCCTTGGTG
CTTACAGGATTTTAACAAATGTTGAAATAAATAATATTGCTCTAATAGTT
TATGCAACCTGTTACAAAAGCCTAGAACAGCAACATGGAGACAGAATGTC
CCCAGTGGTCTTGACCCTTTACTTCAAACCGTGAAACTTAGAAACATTTG
CACCATTTTAATTTGTAAGCAATTGTGTAGAGAATGTCTCCTGTGGTAGG
GGTATGTCCCTTTGTTATGGTCTCACAACAGAAGATGTTCACCTTGTGTT
TATGAAACTTCCCAAAAGTTCCTGGGCATTAACAAGGCAGATCACAGAAA
AAAAAAATCAAGCCTNAAAACTTATAGTAGTCTCTTGATTTGGGCTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_k06.b1 MSMg01no512_k06.b1 CHROMAT_FILE:
MSMg01no512_k06.b1 PHD_FILE: MSMg01no512_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:52 2005
         (692 letters)



>mm_chr10_29250678_29251769
          Length = 1092

 Score = 1315 bits (680), Expect = 0.0
 Identities = 686/688 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattttcccaatatgtttagagactaggctattgtgcataactggtcatcttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaattccattttcccaatatgtttagagactaggctattgtgcataactggtcatcttta 833

                                                                       
Query: 65  taagtgttgttgcgatgatgctgacaaatgacgaatctgactagagtgttttctcatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 taagtgttgttgcgatgatgctgacaaatgacgaatctgactagagtgttttctcatcat 773

                                                                       
Query: 125 acttcattatttgattatccagaagcctccctaggatgattctgcccccgagggcatttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 acttcattatttgattatccagaagcctccctaggatgattctgcccccgagggcatttc 713

                                                                       
Query: 185 ctctctgcaagagggtattaggtacaatgttctttaattgtgggcatctattaacttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctctctgcaagagggtattaggtacaatgttctttaattgtgggcatctattaacttcat 653

                                                                       
Query: 245 cttagtttttcagatttttagatcattcgtgttttagaaattcattatatgcctaccaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cttagtttttcagatttttagatcattcgtgttttagaaattcattatatgcctaccaat 593

                                                                       
Query: 305 taaaatacagctactacaatctgcagagaggggtgaaaagaatcaaaagtacaacaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 taaaatacagctactacaatctgcagagaggggtgaaaagaatcaaaagtacaacaaaaa 533

                                                                       
Query: 365 taatcacactaataatatatttatcggaactgattacttcctatgatggtgtagggatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taatcacactaataatatatttatcggaactgattacttcctatgatggtgtagggatgt 473

                                                                       
Query: 425 tgacatatgtaagcttttctgatctcttggtgattttattgctgatcctggtaatcatgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgacatatgtaagcttttctgatctcttggtgattttattgctgatcctggtaatcatgt 413

                                                                       
Query: 485 taacagataaaataaaaaaaaacactgttaaattgaaatattaatgtaatgttttatttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 taacagataaaataaaaaaaaacactgttaaattgaaatattaatgtaatgttttatttg 353

                                                                       
Query: 545 gagatttggaacaatgccctttttcgtttcttgcctacatttgccacctgcatgccttag 604
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gagatttggaacaatgccctgtttcgtttcttgcctacatttgccacctgcatgccttag 293

                                                                       
Query: 605 tcttaagaacaacagttcaagagagatctgaccaagaactgttggagaaagtgcattcta 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 292 tcttaagaacaacagttcaagagagatctgaccaagaactgttggagaaagtgccttcta 233

                                       
Query: 665 tggcgtatcacatggtatgaatgcaaat 692
           ||||||||||||||||||||||||||||
Sbjct: 232 tggcgtatcacatggtatgaatgcaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_k06.g1 MSMg01no512_k06.g1 CHROMAT_FILE:
MSMg01no512_k06.g1 PHD_FILE: MSMg01no512_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:52 2005
         (612 letters)



>mm_chr10_29218623_29219634
          Length = 1012

 Score = 1168 bits (604), Expect = 0.0
 Identities = 610/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgatatgtggccacagaagtaagagtttaataaaagtaggttgaatgaatgaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgatatgtggccacagaagtaagagtttaataaaagtaggttgaatgaatgaattag 260

                                                                       
Query: 61  tgaaagactaactgacataagcgaaggaagttcatctgcagatgtattcaactcctgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaagactaactgacataagcgaaggaagttcatctgcagatgtattcaactcctgtca 320

                                                                       
Query: 121 aatgacaattagcttgtggagacggccattcataggctcactagaaaattatctataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgacaattagcttgtggagacggccattcataggctcactagaaaattatctataatt 380

                                                                       
Query: 181 agttaaagatatacaacatatttgtaggcagtggtactgaggacatgattaagaaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttaaagatatacaacatatttgtaggcagtggtactgaggacatgattaagaaatatg 440

                                                                       
Query: 241 gggatgatcatttaaaaatcagcaactgtagttctacatgaaatttatttcacctcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgatcatttaaaaatcagcaactgtagttctacatgaaatttatttcacctcatgc 500

                                                                       
Query: 301 actatcttcagtggtaagtttctccttggtgcttacaggattttaacaaatgttgaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatcttcagtggtaagtttctccttggtgcttacaggattttaacaaatgttgaaata 560

                                                                       
Query: 361 aataatattgctctaatagtttatgcaacctgttacaaaagcctagaacagcaacatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataatattgctctaatagtttatgcaacctgttacaaaagcctagaacagcaacatgga 620

                                                                       
Query: 421 gacagaatgtccccagtggtcttgaccctttacttcaaaccgtgaaacttagaaacattt 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacataatgtccccagtggtcttgaccctttacttcaaaccgtgaaacttagaaacattt 680

                                                                       
Query: 481 gcaccattttaatttgtaagcaattgtgtagagaatgtctcctgtggtaggggtatgtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaccattttaatttgtaagcaattgtgtagagaatgtctcctgtggtaggggtatgtcc 740

                                                                       
Query: 541 ctttgttatggtctcacaacagaagatgttcaccttgtgtttatgaaacttcccaaaagt 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttgttatggtctcacaacagatgatgttcaccttgtgtttatgaaacttcccaaaagt 800

                       
Query: 601 tcctgggcatta 612
           ||||||||||||
Sbjct: 801 tcctgggcatta 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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