BAC Information

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BAC

Clone NameMSMg01-512O02
Chromosome10 (Build37)
Map Location 37,516,568 - 37,516,726
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O02.T7 (MSMg01no512_o02.b1)MSMg01-512O02.TJ (MSMg01no512_o02.g1)
ACCAG585737AG585738
length693820
length of high quality
(start - end)
99 (68 - 166)161 (73 - 233)
definitionCHROMAT_FILE: MSMg01no512_o02.b1 PHD_FILE: MSMg01no512_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:11 2005CHROMAT_FILE: MSMg01no512_o02.g1 PHD_FILE: MSMg01no512_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCACAAGAGGATCCGCGGAATTC
ATGCTGCCTTAATAGTGTTATTTTGAGCAGTATACTTCCTTGGTTTTTAT
GCTTCTAGTGTTTTTGTTATAATTTGTGCTCTTATTTGTTTGCATATGGT
GACTTCTTTTATTTNTGNNCCCAAAAACCCCCCCTTCTTCTATAACATAC
ATCAACTNNTTTATTCTTTGTATACAATTACTTTTTCCGGGCTCTCGATT
CTCTCACCAAACCTATAATTAAGAAAAACATGGTTTTAAACTGCAACATC
AAACCCTCCAAAAAATTAAAAACTTACCTTTTAAAAATTCTTGAAACCTT
ACATAAAAATTAAAAAATCGTCTCCCAAACAAAAAAATCCCAAAACAACA
AACCGTTTCAAACCTTTAAAATTTCCTTAAAAGACTCCCCAACCACATCT
TTTCTCCAAAAAATCCCCCCTTATCTAATCAACCACCTCTACCCAAACAA
TATTTTTCCAATATTCCCCCTCTCACCCTTTCAAATATTAACACCATCTT
CTCACTTTTTTTTCAACACCACCTCTAATTCACTTCCCTAAAAAATCGGA
ACACTCTACTTCTTCCCTTACTAAATACTCCCACTCCCCTAAACAACGTC
CCTTCTTATCACATCCCATAACTTAACCCTTTCCCTTTCGCAA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATATCTATTCTGAACAAATGTATTCCA
TGATCTTTTGAGAAATATCAGAAAAAATGCTAAAGTTTGATTTGTTTTAT
ATTTGTTTAAGTAAAAATTTGACTCAAGGTCATGGAATAGGAAAATGGTC
ACTGCTATTTAGATAGGCGTTGTTGCAAGCACGTTCGGGTAGGCAGGTAA
GAAAGATAGTAATAACGGCGATGAAACAAATGTAACCTTTATCTGTGAAA
ATATTCTTAAAAACTTTTCCGCCTCGGGTTCTTCCCCCTCCTCTTCTCCA
TCTCATCTTTCTTTATATCTTTCCGGCTCGCCACATTTTTTTATCTATTC
ACATGGCGCATACTACATTCTACTCTTTTTTTACTTCTTCTCCTTTTTTT
TTCACATCTTTTTGATCATCATAATTCCCCCTATGTCTGAAATACTTACT
AATCTCTTTCCTTTCCCCCTTCTTCTTTACCTTCCCATTCTCACTTATCT
TATTTTTTATCCCCCTTATAATTTTCTTTACCTTCACTATTTTGTATCTT
TGTACTGATTCCCTTTTTATTTAGCGACACCCCATTTGTCTTTATATTTC
TTTTCTCTACCTTATTTTCCTTTTTCCCTCCCTTGATTTCTCCCCAGCCC
CTTCTTATCAACACTCTCTTACTTTGTTTTTTATCTTATATCGTTCCTTA
AACATCCATACCACCTTCTTTCCCTTATACTCGTCTATTCCTATCCTTTT
CTCCCCCGCCCCCTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o02.g1 MSMg01no512_o02.g1 CHROMAT_FILE:
MSMg01no512_o02.g1 PHD_FILE: MSMg01no512_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:11 2005
         (161 letters)



>mm_chr10_37516368_37516928
          Length = 561

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatctattctgaacaaatgtattccatgatcttttgagaaatatcagaaaaaatgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatctattctgaacaaatgtattccatgatcttttgagaaatatcagaaaaaatgcta 260

                                                                       
Query: 61  aagtttgatttgttttatatttgtttaagtaaaaatttgactcaaggtcatggaatagga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aagtttgatttgttttatatttgtttaagtaaaaatttgattcaaggtcatggaatagga 320

                                                  
Query: 121 aaatggtcactgctatttagataggcgttgttgcaagca 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatggtcactgctatttagataggcgttgttgcaagca 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)