Query= MSMg01no513_j14.b1 MSMg01no513_j14.b1 CHROMAT_FILE:
MSMg01no513_j14.b1 PHD_FILE: MSMg01no513_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:09 2005
(715 letters)
>mm_chr10_89906474_89907588
Length = 1115
Score = 1332 bits (689), Expect = 0.0
Identities = 707/715 (98%), Gaps = 4/715 (0%)
Strand = Plus / Minus
Query: 5 gaattctaccatctgtattttaagtacctcatgaaatgatggactttcctgttaacatgt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 gaattctaccaactgtattttaagtacctcatgaaatgatggactttcctgttaacatgt 1050
Query: 65 taacagagtttccacatattgaaatattcatgcatggtgtggtggtttgaatatgcttgg 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1049 taacagagtttccacatattgaaacattcatgcatggtgtggtggtttgaatatgcttgg 990
Query: 125 cccagggagtgattctatttggaggtgtggccttgttggagaaagtgtgtcactgtgggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 cccagggagtgattctatttggaggtgtggccttgttggagaaagtgtgtcactgtgggg 930
Query: 185 gtgagctttgatactcggctcagtgtggaagagtcagtcttctcttagtggccttcagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtgagctttgatactcggctcagtgtggaagagtcagtcttctcttagtggccttcagat 870
Query: 245 gaagatgtagaactctcagctcctcctacaccattcctccctagacgctgccatgctcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaagatgtagaactctcagctcctcctacaccattcctccctagacgctgccatgctcct 810
Query: 305 ggcttgatgataatggactgaacctctgaacctgtaagcca----tggtcatggtatctg 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 809 ggcttgatgataatggactgaacctctgaacctgtaagccagccgtggtcatggtatctg 750
Query: 361 gtcacagcagtaaaaccctaactaagacacatgcctataattacaactaatttttatggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtcacagcagtaaaaccctaactaagacacatgcctataattacaactaatttttatggc 690
Query: 421 cctgtgagttctgatataattagttgaaagtcctgtttgtgacaagatttttaaattgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cctgtgagttctgatataattagttgaaagtcctgtttgtgacaagatttttaaattgga 630
Query: 481 aataacaaggcatgagtctttccacttaagatcaagtgtttgtgtgtatagacatagtat 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 629 aataacaaggcatgagtctttccacttaagatcaagtgtttgtgtgtgtagacatagtat 570
Query: 541 tcatacaaatttatataaacacatatatgcagtcatctacaaaaacatatataaataatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcatacaaatttatataaacacatatatgcagtcatctacaaaaacatatataaataatg 510
Query: 601 tgcatatttaggcatgcataaataatttacacatatatacaaaggaaaactgtaaataaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgcatatttaggcatgcataaataatttacacatatatacaaaggaaaactgtaaataaa 450
Query: 661 gggagtgtactttgtctacttgattttaggccaatcattgaagttctcatttctg 715
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 449 gggagtgtactttgtctacttgattttaggccaatcattgaagttctcgtttctg 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_j14.g1 MSMg01no513_j14.g1 CHROMAT_FILE:
MSMg01no513_j14.g1 PHD_FILE: MSMg01no513_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:09 2005
(617 letters)
>mm_chr10_89743820_89744836
Length = 1017
Score = 1162 bits (601), Expect = 0.0
Identities = 613/617 (99%), Gaps = 1/617 (0%)
Strand = Plus / Plus
Query: 1 aatttttcatcaatgtctagaaaaatgatttaatatcagtatttgatgctctggctatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttttcatcaatgtctagaaaaatgatttaatatcagtatttgatgctctggctatgt 260
Query: 61 ccagtgtcttcaatcattagaattaaatgccaactcttaccttatttattgctccacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtgtcttcaatcattagaattaaatgccaactcttaccttatttattgctccacagt 320
Query: 121 acatttgttgtatttgcataaaggtattagcagtgcaggtttgccattgtcttaatctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttgttgtatttgcataaaggtattagcagtgcaggtttgccattgtcttaatctca 380
Query: 181 tactatacatgaagaaactaaagatttaagggaatgaaatgttgattggattgacaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactatacatgaagaaactaaagatttaagggaatgaaatgttgattggattgacaaata 440
Query: 241 agtacaaaaactagtattacaatggagccctttcataaacttgccaaattataattattt 300
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agtacaaaaactagtactacaatggagccctttcataaactcgccaaattataattattt 500
Query: 301 gacactttttaaaaaatgagccaatatgaaaagaacttttagacatttcagattcatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacactttttaaaaaatgagccaatatgaaaagaacttttagacatttcagattcatata 560
Query: 361 ttttacttatatccctttcttttagtgtgtggtacatgccccagataaccataaattttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttacttatatccctttcttttagtgtgtggtacatgccccagataaccataaattttc 620
Query: 421 ctctaatattttatctttaaaagtgttttttaattgttttatttattatttatttattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctaatattttatctttaaaagtgttttttaattgttttatttattatttatttattta 680
Query: 481 cattccaaatgttgtctccctttccagtcccttctccaagagttctttgccacatcctcc 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 cattccaaatgttgtctccctttccagtcccttctccaagagttcttcgccacatcctcc 740
Query: 541 ctcccctttacctctgagaagggggcttcattcacccaccccacacctcacccgtctagc 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcccctttacctctgaga-gggggcttcattcacccaccccacacctcacccgtctagc 799
Query: 601 atgcatcctccttccct 617
|||||||||||||||||
Sbjct: 800 atgcatcctccttccct 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
