BAC Information

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BAC

Clone NameMSMg01-514D20
Chromosome10 (Build37)
Map Location 27,746,441 - 27,879,381
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514D20.T7 (MSMg01no514_d20.b1)MSMg01-514D20.TJ (MSMg01no514_d20.g1)
ACCAG586772AG586773
length743755
length of high quality
(start - end)		559 (36 - 594)610 (64 - 673)
definitionCHROMAT_FILE: MSMg01no514_d20.b1 PHD_FILE: MSMg01no514_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:03 2005CHROMAT_FILE: MSMg01no514_d20.g1 PHD_FILE: MSMg01no514_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,746,441 - 27,746,995)(27,878,772 - 27,879,381)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAAT
GTTTTACATGACATGTCATAAAAATGACTATTTTATAAACACAAATTAAT
TGTCACACTTCTATTGGTAATATGTAAAGGACAAACTACACAGCAAGCCC
ACAGTTCTGAGATTAGTAAACATGTCGAATGCTAATAACAGTGTGTGATC
TCTAAGCATCTCCGCTCCTGTATAGCTCTGGCAAAATGACTTTCAACCTT
CCAATTTCATGTTTGTTTAATAAACTGAAAAAAATAATTGCCTGATTGTT
TTCATTAAATTAGTACACAAAGATGAAGTTAGGGTTATAATCCTCTATTG
TTTTAAAATATTACTTTCAAAAACTATTCAGATTAGAGGGGGGTCTAATA
TTGTGCCAATTTATATTTTTCCAGGGCACTGTGTGTTTCTGACTTTCTTC
TAGTCACTGTGCAGTTTTGCTTTCCTCTTCTGGATGTATTCTGCCATTCT
CTAATTACTTTGTGCTCCATCTTGTTCTGTTTTCTTTCTCCATTCAAACT
AGTACAAGATTCTGTCTAGATCATAGAAGCTTTGCTCTCTTGGTATGAGG
GGATTCTAGTGTTCCCAAGCAATACTGCAAGCTGACACTAGACTGTAATA
AGCCAAAGTAAAGAAAAAGGTGGTGGGCAGGCAAAAAAAAATAGTCATTC
AGTAATAAGTAAGTAACTTATTGTATTGGGACTTCTGGCATAA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATATAATTTTTGGAATAAAATTAATTCTAGGAAAAGT
GCTATCCAAGCACAGAAATAAGCCAGGAGTGTGGCCCTTTCTAAACTGGT
TCCTTCCTTTTGCACTTCTCTGTCAAATTGTGTTGAGGTGTGGGGCACTC
ACAAGGTCATATTATGCTATTTAACGTTTACATAAATCAGGATCATCAGC
CAAGAAAACCTCTTAAATATCTTCAGGTATTTTTTTTTTTAATACCAACA
GAAAAGTACCAAGAGAGTGGCAGAGAAAAACGTTCTAAAAGGAGATGATT
TCCTTGCAATTCAAAGTCATTTCATGGTCACTGCTTTTAAATAAGCTGAG
TCTAAGTCATTAATAACCACCACAGTTTACTGGAACATAAAAGTGTATAT
CATCCTATGTGCCCAGGACCCAGAGAATGAAGGAGTGAAGATATCTGAGA
GGGCAAGTAGGGAAGAGAACAGGGGTAGGAAAAAATGTTGGCAAGGGGTG
GACACATCAAAGGAAGGAGGCACAAAAGAACAGGAGAACGAGAAGGAAAT
GTAAGACGGCTGTGCTTGCAATCCAAAGACAAAAGCTCTTTAGGGAAAAG
ACTTAAGATATTAAGTAGAGCAAAGGAGATGTGATGGTTTGTATATGCTT
GTCCCAGGGAGTAGCACTATTAGGAAGTGTTGCCTCCTTTGAGTAGTGTG
TCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_d20.b1 MSMg01no514_d20.b1 CHROMAT_FILE:
MSMg01no514_d20.b1 PHD_FILE: MSMg01no514_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:03 2005
         (559 letters)



>mm_chr10_27746237_27747195
          Length = 959

 Score = 1050 bits (543), Expect = 0.0
 Identities = 552/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaatgttttacatgacatgtcataaaaatgactattttataaacacaaattaa 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaatgtttcatatgacatgtcataaaaatgactattttataaacacaaattaa 264

                                                                       
Query: 65  ttgtcacacttctattggtaatatgtaaaggacaaactacacagcaagcccacagttctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtcacacttctattggtaatatgtaaaggacaaactacacagcaagcccacagttctg 324

                                                                       
Query: 125 agattagtaaacatgtcgaatgctaataacagtgtgtgatctctaagcatctccgctcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agattagtaaacatgtcgaatgctaataacagtgtgtgatctctaagcatctccgctcct 384

                                                                       
Query: 185 gtatagctctggcaaaatgactttcaaccttccaatttcatgtttgtttaataaactgaa 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 gtatagctctggcaaaatgactttcaaccttccaatttcatgtttgattaataaactgaa 444

                                                                       
Query: 245 aaaaataattgcctgattgttttcattaaattagtacacaaagatgaagttagggttata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaataattgcctgattgttttcattaaattagtacacaaagatgaagttagggttata 504

                                                                       
Query: 305 atcctctattgttttaaaatattactttcaaaaactattcagattagaggggggtctaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcctctattgttttaaaatattactttcaaaaactattcagattagaggggggtctaat 564

                                                                       
Query: 365 attgtgccaatttatatttttccagggcactgtgtgtttctgactttcttctagtcactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attgtgccaatttatatttttccagggcactgtgtgtttctgactttcttctagtcactg 624

                                                                       
Query: 425 tgcagttttgctttcctcttctggatgtattctgccattctctaattactttgtgctcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcagttttgctttcctcttctggatgtattctgccattctctaattactttgtgctcca 684

                                                                       
Query: 485 tcttgttctgttttctttctccattcaaactagtacaagattctgtctagatcatagaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcttgttctgttttctttctccattcaaactagtacaagattctgtctagatcatagaag 744

                          
Query: 545 ctttgctctcttggt 559
           |||||||||||||||
Sbjct: 745 ctttgctctcttggt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_d20.g1 MSMg01no514_d20.g1 CHROMAT_FILE:
MSMg01no514_d20.g1 PHD_FILE: MSMg01no514_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:03 2005
         (610 letters)



>mm_chr10_27878572_27879581
          Length = 1010

 Score = 1149 bits (594), Expect = 0.0
 Identities = 606/610 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataatttttggaataaaattaattctaggaaaagtgctatccaagcacagaaataagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 atataatttttggaataaaattaattctaggaaaagtgctatccaagcacagaaataagc 751

                                                                       
Query: 61  caggagtgtggccctttctaaactggttccttccttttgcacttctctgtcaaattgtgt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 750 caggagtgtggccctttctaaactggctccttccttttgcacttctctgtcaaattgtgt 691

                                                                       
Query: 121 tgaggtgtggggcactcacaaggtcatattatgctatttaacgtttacataaatcaggat 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tggggtgtggggcactcacaaggtcatattatgctatttaacgtttacataaatcaggat 631

                                                                       
Query: 181 catcagccaagaaaacctcttaaatatcttcaggtatttttttttttaataccaacagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 catcagccaagaaaacctcttaaatatcttcaggtatttttttttttaataccaacagaa 571

                                                                       
Query: 241 aagtaccaagagagtggcagagaaaaacgttctaaaaggagatgatttccttgcaattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aagtaccaagagagtggcagagaaaaacgttctaaaaggagatgatttccttgcaattca 511

                                                                       
Query: 301 aagtcatttcatggtcactgcttttaaataagctgagtctaagtcattaataaccaccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagtcatttcatggtcactgcttttaaataagctgagtctaagtcattaataaccaccac 451

                                                                       
Query: 361 agtttactggaacataaaagtgtatatcatcctatgtgcccaggacccagagaatgaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agtttactggaacataaaagtgtatatcatcctatgtgcccaggacccagagaatgaagg 391

                                                                       
Query: 421 agtgaagatatctgagagggcaagtagggaagagaacaggggtaggaaaaaatgttggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agtgaagatatctgagagggcaagtagggaagagaacaggggtaggaaaaaatgttggca 331

                                                                       
Query: 481 aggggtggacacatcaaaggaaggaggcacaaaagaacaggagaacgagaaggaaatgta 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggggtggacacaccaaaggaaggaggcacaaaagaacaggagaacgagaaggaaatgta 271

                                                                       
Query: 541 agacggctgtgcttgcaatccaaagacaaaagctctttagggaaaagacttaagatatta 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agacggttgtgcttgcaatccaaagacaaaagctctttagggaaaagacttaagatatta 211

                     
Query: 601 agtagagcaa 610
           ||||||||||
Sbjct: 210 agtagagcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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